Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20995

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
4,011,339	+	nrdG	LU632_RS20980	0.64	+1.2
4,011,340	-	nrdG	LU632_RS20980	0.65	+1.0
4,011,490	+				+0.6
4,011,497	+				+0.4
4,011,497	+				+2.0
4,011,497	+				+0.6
4,011,511	+				-0.6
4,011,511	+				-0.7
4,011,511	+				+1.4
4,011,511	+				+1.6
4,011,512	-				+0.8
4,011,551	+				-2.3
4,011,552	-				-0.4
4,011,582	+		LU632_RS20985	0.17	+0.3
4,011,630	+		LU632_RS20985	0.28	+1.1
4,011,643	+		LU632_RS20985	0.31	-1.8
4,011,643	+		LU632_RS20985	0.31	+1.0
4,011,691	+		LU632_RS20985	0.42	+0.4
4,011,692	-		LU632_RS20985	0.42	+0.7
4,011,696	+		LU632_RS20985	0.43	-1.2
4,011,763	+		LU632_RS20985	0.59	-0.5
4,011,764	-		LU632_RS20985	0.59	-0.1
4,011,774	-		LU632_RS20985	0.62	+1.3
4,011,911	+				-1.0
4,011,984	+				-0.6
4,011,984	+				+1.2
4,012,086	+		LU632_RS20990	0.13	+0.1
4,012,086	+		LU632_RS20990	0.13	+1.6
4,012,088	+		LU632_RS20990	0.14	-0.4
4,012,327	+				+0.2
4,012,327	+				+0.5
4,012,328	-				-0.0
4,012,336	+				+0.4
4,012,341	-				+1.6
4,012,341	-				+0.3
4,012,361	-				+0.4
4,012,593	-		LU632_RS20995	0.51	-1.4
4,012,647	+		LU632_RS20995	0.62	-0.6
4,012,647	+		LU632_RS20995	0.62	-2.0
4,012,680	+		LU632_RS20995	0.68	-0.4
4,012,737	+		LU632_RS20995	0.80	-0.1
4,012,737	+		LU632_RS20995	0.80	-2.0
4,012,786	-		LU632_RS20995	0.89	-1.2
4,012,880	+				-0.1
4,012,881	-				+0.7
4,012,925	+		LU632_RS21000	0.18	-2.0
4,012,925	+		LU632_RS21000	0.18	+0.3
4,012,925	+		LU632_RS21000	0.18	+0.1
4,012,939	+		LU632_RS21000	0.20	-2.0
4,012,939	+		LU632_RS21000	0.20	-1.2
4,012,939	+		LU632_RS21000	0.20	-0.0
4,012,939	+		LU632_RS21000	0.20	-2.4
4,012,941	+		LU632_RS21000	0.21	-0.0
4,012,941	+		LU632_RS21000	0.21	+0.4
4,012,941	+		LU632_RS21000	0.21	-1.8
4,012,941	+		LU632_RS21000	0.21	-1.9
4,012,941	+		LU632_RS21000	0.21	-1.8
4,012,941	+		LU632_RS21000	0.21	-2.7
4,012,954	+		LU632_RS21000	0.23	-0.7
4,013,124	-		LU632_RS21000	0.56	-1.4
4,013,310	-				+1.0
4,013,310	-				+1.4
4,013,310	-				+0.5
4,013,338	+				-1.1
4,013,339	-				+1.4
4,013,339	-				+1.7
4,013,343	-				-1.0
4,013,357	+				-2.4
4,013,358	-				-2.6
4,013,387	-				-0.0
4,013,433	+				-0.0
4,013,434	-				+0.4
4,013,434	-				-1.4
4,013,434	-				-0.0
4,013,434	-				+0.5
4,013,476	+				+1.5
4,013,481	+				-1.8
4,013,483	+				+0.7
4,013,483	+				-1.0
4,013,483	+				+0.0
4,013,484	-				-0.0
4,013,484	-				-0.9
4,013,484	-				+0.7
4,013,493	-				-1.6
4,013,522	+				+0.3
4,013,522	+				+0.2
4,013,523	-				+4.3
4,013,525	-				+0.8
4,013,561	+				-0.6
4,013,635	-				+1.0
4,013,718	+		LU632_RS21005	0.16	-0.8
4,013,760	-		LU632_RS21005	0.20	+2.1