Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt argF and rraB are separated by 157 nucleotides rraB and LU632_RS20910 are separated by 109 nucleotides LU632_RS20910 and LU632_RS20915 are separated by 76 nucleotides LU632_RS20915 and LU632_RS20920 are separated by 24 nucleotides
LU632_RS20900: argF - ornithine carbamoyltransferase, at 3,994,205 to 3,995,215
argF
LU632_RS20905: rraB - ribonuclease E inhibitor RraB, at 3,995,373 to 3,995,789
rraB
LU632_RS20910: LU632_RS20910 - tRNA isopentenyl-2-thiomethyl-A-37 hydroxylase MiaE, at 3,995,899 to 3,996,662
_RS20910
LU632_RS20915: LU632_RS20915 - IS1 family transposase, at 3,996,739 to 3,997,436
_RS20915
LU632_RS20920: LU632_RS20920 - phosphoglycerate mutase family protein, at 3,997,461 to 3,997,922
_RS20920
Position (kb) 3995
3996
3997 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3994.914 kb on + strand, within argF at 3994.914 kb on + strand, within argF at 3994.914 kb on + strand, within argF at 3994.914 kb on + strand, within argF at 3994.914 kb on + strand, within argF at 3994.914 kb on + strand, within argF at 3994.915 kb on - strand, within argF at 3994.915 kb on - strand, within argF at 3994.915 kb on - strand, within argF at 3994.915 kb on - strand, within argF at 3994.915 kb on - strand, within argF at 3994.915 kb on - strand, within argF at 3994.915 kb on - strand, within argF at 3994.989 kb on + strand, within argF at 3994.989 kb on + strand, within argF at 3995.290 kb on - strand at 3995.318 kb on + strand at 3995.328 kb on + strand at 3995.328 kb on + strand at 3995.466 kb on + strand, within rraB at 3995.466 kb on + strand, within rraB at 3995.469 kb on - strand, within rraB at 3995.471 kb on + strand, within rraB at 3995.695 kb on - strand, within rraB at 3995.695 kb on - strand, within rraB at 3995.712 kb on + strand, within rraB at 3995.712 kb on + strand, within rraB at 3995.712 kb on + strand, within rraB at 3995.713 kb on - strand, within rraB at 3995.747 kb on + strand, within rraB at 3995.748 kb on - strand at 3995.898 kb on + strand at 3995.994 kb on - strand, within LU632_RS20910 at 3995.999 kb on + strand, within LU632_RS20910 at 3996.067 kb on + strand, within LU632_RS20910 at 3996.068 kb on - strand, within LU632_RS20910 at 3996.098 kb on + strand, within LU632_RS20910 at 3996.144 kb on + strand, within LU632_RS20910 at 3996.245 kb on + strand, within LU632_RS20910 at 3996.245 kb on + strand, within LU632_RS20910 at 3996.246 kb on - strand, within LU632_RS20910 at 3996.306 kb on + strand, within LU632_RS20910 at 3996.362 kb on + strand, within LU632_RS20910 at 3996.362 kb on + strand, within LU632_RS20910 at 3996.362 kb on + strand, within LU632_RS20910 at 3996.362 kb on + strand, within LU632_RS20910 at 3996.399 kb on + strand, within LU632_RS20910 at 3996.399 kb on + strand, within LU632_RS20910 at 3996.399 kb on + strand, within LU632_RS20910 at 3996.400 kb on - strand, within LU632_RS20910 at 3996.400 kb on - strand, within LU632_RS20910 at 3996.400 kb on - strand, within LU632_RS20910 at 3996.400 kb on - strand, within LU632_RS20910 at 3996.412 kb on + strand, within LU632_RS20910 at 3996.563 kb on + strand, within LU632_RS20910 at 3996.649 kb on + strand at 3997.500 kb on - strand at 3997.569 kb on - strand, within LU632_RS20920 at 3997.577 kb on + strand, within LU632_RS20920
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 3,994,914 + argF LU632_RS20900 0.70 -3.7 3,994,914 + argF LU632_RS20900 0.70 -1.4 3,994,914 + argF LU632_RS20900 0.70 -1.8 3,994,914 + argF LU632_RS20900 0.70 -2.7 3,994,914 + argF LU632_RS20900 0.70 -3.5 3,994,914 + argF LU632_RS20900 0.70 -2.2 3,994,915 - argF LU632_RS20900 0.70 -2.3 3,994,915 - argF LU632_RS20900 0.70 +0.3 3,994,915 - argF LU632_RS20900 0.70 -2.0 3,994,915 - argF LU632_RS20900 0.70 -0.7 3,994,915 - argF LU632_RS20900 0.70 -3.3 3,994,915 - argF LU632_RS20900 0.70 -3.2 3,994,915 - argF LU632_RS20900 0.70 -3.4 3,994,989 + argF LU632_RS20900 0.78 -3.0 3,994,989 + argF LU632_RS20900 0.78 -2.3 3,995,290 - +0.5 3,995,318 + +0.9 3,995,328 + -0.4 3,995,328 + -1.0 3,995,466 + rraB LU632_RS20905 0.22 -1.0 3,995,466 + rraB LU632_RS20905 0.22 -2.3 3,995,469 - rraB LU632_RS20905 0.23 -0.2 3,995,471 + rraB LU632_RS20905 0.24 +0.3 3,995,695 - rraB LU632_RS20905 0.77 -0.1 3,995,695 - rraB LU632_RS20905 0.77 -1.1 3,995,712 + rraB LU632_RS20905 0.81 +1.9 3,995,712 + rraB LU632_RS20905 0.81 -0.4 3,995,712 + rraB LU632_RS20905 0.81 +0.3 3,995,713 - rraB LU632_RS20905 0.82 +0.1 3,995,747 + rraB LU632_RS20905 0.90 +0.3 3,995,748 - +0.7 3,995,898 + -0.7 3,995,994 - LU632_RS20910 0.12 -0.1 3,995,999 + LU632_RS20910 0.13 -1.1 3,996,067 + LU632_RS20910 0.22 +1.3 3,996,068 - LU632_RS20910 0.22 -1.2 3,996,098 + LU632_RS20910 0.26 -0.3 3,996,144 + LU632_RS20910 0.32 -1.8 3,996,245 + LU632_RS20910 0.45 -1.7 3,996,245 + LU632_RS20910 0.45 +0.6 3,996,246 - LU632_RS20910 0.45 -1.2 3,996,306 + LU632_RS20910 0.53 -1.0 3,996,362 + LU632_RS20910 0.61 +3.1 3,996,362 + LU632_RS20910 0.61 +1.5 3,996,362 + LU632_RS20910 0.61 +1.9 3,996,362 + LU632_RS20910 0.61 +1.0 3,996,399 + LU632_RS20910 0.65 +0.5 3,996,399 + LU632_RS20910 0.65 +0.7 3,996,399 + LU632_RS20910 0.65 +0.3 3,996,400 - LU632_RS20910 0.66 -0.3 3,996,400 - LU632_RS20910 0.66 +1.7 3,996,400 - LU632_RS20910 0.66 -0.5 3,996,400 - LU632_RS20910 0.66 -0.7 3,996,412 + LU632_RS20910 0.67 +0.6 3,996,563 + LU632_RS20910 0.87 -0.7 3,996,649 + +2.2 3,997,500 - +2.9 3,997,569 - LU632_RS20920 0.23 -1.1 3,997,577 + LU632_RS20920 0.25 +0.7
Or see this region's nucleotide sequence