Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20835

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,974,809	-		LU632_RS20825	0.71	-0.7
3,974,877	-		LU632_RS20825	0.84	+1.4
3,974,877	-		LU632_RS20825	0.84	-2.1
3,974,926	+				+1.7
3,974,927	-				+1.4
3,974,945	+				-0.9
3,975,020	+				-1.2
3,975,020	+				-0.9
3,975,039	+				-0.7
3,975,040	-				-0.7
3,975,228	+		LU632_RS20830	0.43	+0.1
3,975,284	-		LU632_RS20830	0.56	-1.9
3,975,384	-		LU632_RS20830	0.78	+0.2
3,975,457	+				+1.4
3,975,587	-				+2.1
3,975,605	-				-0.6
3,975,605	-				+0.3
3,975,620	-				-1.1
3,975,620	-				-0.5
3,975,620	-				-1.2
3,975,682	-				-3.4
3,975,936	-				-0.5
3,976,059	+		LU632_RS20835	0.19	+1.3
3,976,103	+		LU632_RS20835	0.22	-1.7
3,976,103	+		LU632_RS20835	0.22	+0.4
3,976,103	+		LU632_RS20835	0.22	+0.9
3,976,104	-		LU632_RS20835	0.22	-3.1
3,976,104	-		LU632_RS20835	0.22	-1.4
3,976,104	-		LU632_RS20835	0.22	-0.7
3,976,241	+		LU632_RS20835	0.32	-2.5
3,976,242	-		LU632_RS20835	0.32	-1.1
3,976,242	-		LU632_RS20835	0.32	-1.0
3,976,242	-		LU632_RS20835	0.32	+0.8
3,976,242	-		LU632_RS20835	0.32	-0.1
3,976,256	+		LU632_RS20835	0.33	-2.2
3,976,257	-		LU632_RS20835	0.33	-0.8
3,976,333	+		LU632_RS20835	0.39	+1.4
3,976,334	-		LU632_RS20835	0.39	-0.5
3,976,488	-		LU632_RS20835	0.50	+0.8
3,976,488	-		LU632_RS20835	0.50	-0.6
3,976,491	+		LU632_RS20835	0.50	+0.3
3,976,491	+		LU632_RS20835	0.50	-0.1
3,976,492	-		LU632_RS20835	0.50	-0.4
3,976,492	-		LU632_RS20835	0.50	+1.3
3,976,529	+		LU632_RS20835	0.53	+0.9
3,976,586	+		LU632_RS20835	0.57	-0.7
3,976,587	-		LU632_RS20835	0.57	-1.4
3,976,604	+		LU632_RS20835	0.58	-2.9
3,976,620	+		LU632_RS20835	0.59	-0.9
3,976,625	+		LU632_RS20835	0.60	-0.2
3,976,743	-		LU632_RS20835	0.68	-0.1
3,976,743	-		LU632_RS20835	0.68	+0.3
3,976,743	-		LU632_RS20835	0.68	-1.4
3,976,824	-		LU632_RS20835	0.74	+1.3
3,976,825	+		LU632_RS20835	0.74	-1.9
3,976,825	+		LU632_RS20835	0.74	-1.9
3,976,825	+		LU632_RS20835	0.74	-0.7
3,976,836	-		LU632_RS20835	0.75	-0.4
3,976,852	-		LU632_RS20835	0.76	+0.2
3,976,853	+		LU632_RS20835	0.76	+1.8
3,976,853	+		LU632_RS20835	0.76	-2.1
3,976,856	+		LU632_RS20835	0.77	-0.4
3,976,934	+		LU632_RS20835	0.82	-0.4
3,976,935	-		LU632_RS20835	0.82	-0.1
3,976,935	-		LU632_RS20835	0.82	-1.4
3,977,049	+				-0.7
3,977,049	-				+1.8
3,977,083	+				+3.3
3,977,189	-				+1.0
3,977,189	-				-0.7
3,977,190	+				-0.5
3,977,190	+				+0.2
3,977,190	+				+2.8
3,977,191	-				+2.5
3,977,191	-				+0.7
3,977,226	-				+1.5
3,977,387	+				-1.2
3,977,467	-				-0.5
3,977,713	-		LU632_RS20840	0.29	+2.1
3,977,713	-		LU632_RS20840	0.29	+1.2
3,977,713	-		LU632_RS20840	0.29	+2.1
3,977,846	+		LU632_RS20840	0.39	-2.4
3,977,846	+		LU632_RS20840	0.39	+0.9
3,977,846	+		LU632_RS20840	0.39	-0.7
3,977,847	-		LU632_RS20840	0.39	-1.5
3,977,857	-		LU632_RS20840	0.40	-0.4
3,977,936	-		LU632_RS20840	0.46	+1.1
3,977,936	-		LU632_RS20840	0.46	+2.3
3,977,987	+		LU632_RS20840	0.50	-1.2
3,978,122	+		LU632_RS20840	0.61	+2.7
3,978,122	+		LU632_RS20840	0.61	-0.8
3,978,122	+		LU632_RS20840	0.61	+1.9
3,978,123	-		LU632_RS20840	0.61	+0.8
3,978,123	-		LU632_RS20840	0.61	+0.5
3,978,161	+		LU632_RS20840	0.64	+1.5
3,978,161	+		LU632_RS20840	0.64	+2.5
3,978,162	-		LU632_RS20840	0.64	+0.9
3,978,162	-		LU632_RS20840	0.64	+0.8