Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20820

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,973,005	+		LU632_RS20815	0.38	+0.3
3,973,005	+		LU632_RS20815	0.38	-0.2
3,973,006	-		LU632_RS20815	0.38	+0.1
3,973,129	-		LU632_RS20815	0.48	+1.8
3,973,141	+		LU632_RS20815	0.49	+1.3
3,973,191	+		LU632_RS20815	0.53	-0.6
3,973,192	-		LU632_RS20815	0.53	-1.7
3,973,192	-		LU632_RS20815	0.53	-1.4
3,973,192	-		LU632_RS20815	0.53	-0.4
3,973,232	+		LU632_RS20815	0.56	+0.3
3,973,233	-		LU632_RS20815	0.56	+1.7
3,973,238	-		LU632_RS20815	0.56	+1.9
3,973,238	-		LU632_RS20815	0.56	-0.4
3,973,259	+		LU632_RS20815	0.58	-1.0
3,973,359	+		LU632_RS20815	0.66	+2.6
3,973,380	+		LU632_RS20815	0.68	+0.9
3,973,387	-		LU632_RS20815	0.68	+0.2
3,973,455	+		LU632_RS20815	0.74	-0.4
3,973,465	-		LU632_RS20815	0.75	+0.5
3,973,519	+		LU632_RS20815	0.79	+0.1
3,973,752	+				+1.9
3,973,829	+				+0.3
3,974,088	+				-0.6
3,974,088	+				+0.9
3,974,117	-				-0.0
3,974,134	+				-0.6
3,974,134	+				+3.5
3,974,134	+				+0.5
3,974,134	+				+0.1
3,974,204	-				-0.4
3,974,237	+				-1.5
3,974,258	-				-0.8
3,974,310	-				+0.0
3,974,340	-				-2.7
3,974,341	+				-1.2
3,974,341	+				-1.8
3,974,341	+				-1.5
3,974,342	-				+1.1
3,974,417	+				+0.9
3,974,417	+				-1.2
3,974,433	-				-0.8
3,974,451	+				+0.0
3,974,451	+				-0.2
3,974,451	+				-0.4
3,974,451	+				+0.5
3,974,452	-				+2.2
3,974,452	-				-1.9
3,974,473	+				-1.0
3,974,723	-		LU632_RS20825	0.54	+0.2
3,974,762	+		LU632_RS20825	0.61	-0.4
3,974,769	-		LU632_RS20825	0.63	+1.9
3,974,809	-		LU632_RS20825	0.71	-0.7
3,974,877	-		LU632_RS20825	0.84	+1.4
3,974,877	-		LU632_RS20825	0.84	-2.1
3,974,926	+				+1.7
3,974,927	-				+1.4
3,974,945	+				-0.9
3,975,020	+				-1.2
3,975,020	+				-0.9
3,975,039	+				-0.7
3,975,040	-				-0.7