Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20625

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,927,875	+	yqiA	LU632_RS20615	0.82	-0.9
3,927,875	+	yqiA	LU632_RS20615	0.82	+0.1
3,927,875	+	yqiA	LU632_RS20615	0.82	+0.4
3,927,875	+	yqiA	LU632_RS20615	0.82	+0.1
3,927,876	-	yqiA	LU632_RS20615	0.82	+0.3
3,927,876	-	yqiA	LU632_RS20615	0.82	-0.1
3,927,876	-	yqiA	LU632_RS20615	0.82	-1.1
3,927,876	-	yqiA	LU632_RS20615	0.82	+1.3
3,927,876	-	yqiA	LU632_RS20615	0.82	+0.7
3,927,876	-	yqiA	LU632_RS20615	0.82	+1.7
3,927,949	-				-0.9
3,927,966	-				+0.3
3,927,986	+				+1.6
3,928,203	+	cpdA	LU632_RS20620	0.26	+0.7
3,928,243	+	cpdA	LU632_RS20620	0.31	+1.9
3,928,246	+	cpdA	LU632_RS20620	0.32	+8.8
3,928,246	+	cpdA	LU632_RS20620	0.32	+1.3
3,928,247	-	cpdA	LU632_RS20620	0.32	+5.1
3,928,296	+	cpdA	LU632_RS20620	0.38	+4.5
3,928,324	+	cpdA	LU632_RS20620	0.41	+3.4
3,928,366	-	cpdA	LU632_RS20620	0.46	+6.2
3,928,464	+	cpdA	LU632_RS20620	0.58	+6.7
3,928,464	+	cpdA	LU632_RS20620	0.58	+4.9
3,928,464	+	cpdA	LU632_RS20620	0.58	+8.6
3,928,465	-	cpdA	LU632_RS20620	0.58	+5.2
3,928,485	+	cpdA	LU632_RS20620	0.60	+0.3
3,928,485	+	cpdA	LU632_RS20620	0.60	+2.2
3,928,486	-	cpdA	LU632_RS20620	0.61	+8.5
3,928,486	-	cpdA	LU632_RS20620	0.61	+2.9
3,928,503	+	cpdA	LU632_RS20620	0.63	-0.1
3,928,640	-	cpdA	LU632_RS20620	0.79	-1.1
3,928,702	-	cpdA	LU632_RS20620	0.87	+4.8
3,928,706	-	cpdA	LU632_RS20620	0.87	+4.1
3,928,759	+				+1.9
3,928,760	-				+7.6
3,928,918	+		LU632_RS20625	0.14	+6.6
3,928,918	+		LU632_RS20625	0.14	+6.6
3,928,967	+		LU632_RS20625	0.25	+5.5
3,929,063	+		LU632_RS20625	0.48	+1.8
3,929,089	-		LU632_RS20625	0.54	+0.5
3,929,136	+		LU632_RS20625	0.65	-1.2
3,929,136	+		LU632_RS20625	0.65	+2.9
3,929,137	-		LU632_RS20625	0.66	+3.3
3,929,137	-		LU632_RS20625	0.66	+0.9
3,929,138	+		LU632_RS20625	0.66	+0.2
3,929,138	+		LU632_RS20625	0.66	+0.6
3,929,138	+		LU632_RS20625	0.66	-1.0
3,929,159	+		LU632_RS20625	0.71	+1.4
3,929,159	+		LU632_RS20625	0.71	-1.1
3,929,160	-		LU632_RS20625	0.71	-1.1
3,929,160	-		LU632_RS20625	0.71	+1.3
3,929,354	+	nudF	LU632_RS20630	0.12	+2.1
3,929,525	-	nudF	LU632_RS20630	0.39	+1.8
3,929,529	+	nudF	LU632_RS20630	0.40	+0.9
3,929,530	-	nudF	LU632_RS20630	0.40	+1.7
3,929,542	-	nudF	LU632_RS20630	0.42	+0.6
3,929,638	-	nudF	LU632_RS20630	0.57	+0.3
3,929,781	-	nudF	LU632_RS20630	0.79	+0.5
3,929,789	+	nudF	LU632_RS20630	0.81	+1.7
3,929,793	+	nudF	LU632_RS20630	0.81	+0.7
3,929,931	+				-0.8
3,929,932	-				-0.3
3,929,932	-				-0.8
3,930,038	-				+1.1