Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20590

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,921,805	+		LU632_RS20585	0.86	-2.5
3,921,806	-		LU632_RS20585	0.86	+0.6
3,921,809	+		LU632_RS20585	0.87	-1.2
3,921,810	-		LU632_RS20585	0.87	-0.3
3,921,810	-		LU632_RS20585	0.87	-0.7
3,921,810	-		LU632_RS20585	0.87	-0.1
3,921,884	+				-0.9
3,921,906	-				+1.8
3,921,906	-				+0.9
3,921,906	-				+2.5
3,921,963	-				-0.9
3,922,021	+				+1.1
3,922,021	+				-0.3
3,922,021	+				-1.1
3,922,021	+				+1.7
3,922,022	-				+1.7
3,922,022	-				+3.4
3,922,023	+				+4.6
3,922,023	+				+1.1
3,922,023	+				-0.1
3,922,024	-				-0.4
3,922,024	-				-1.7
3,922,024	-				+0.8
3,922,024	-				-0.1
3,922,024	-				+0.6
3,922,024	-				-1.2
3,922,024	-				+1.8
3,922,102	+				+1.0
3,922,102	+				-0.2
3,922,102	+				-0.4
3,922,103	-				-1.4
3,922,103	-				-0.4
3,922,103	-				+2.6
3,922,106	+				-1.2
3,922,107	-				-1.1
3,922,142	+				+1.5
3,922,143	-				-0.1
3,922,145	-				-0.3
3,922,285	-				+0.6
3,922,293	+				+0.7
3,922,296	+				+0.3
3,922,323	+				+0.9
3,922,476	+				+0.2
3,922,489	+				+0.9
3,922,490	-				+0.3
3,922,591	-				-0.1
3,922,660	+				-0.5
3,922,661	-				-1.9
3,922,661	-				+0.3
3,922,671	-				+0.3
3,922,718	-				-0.1
3,922,727	-				+2.0
3,922,761	+				+0.1
3,922,762	-				-0.4
3,922,762	-				-0.4
3,922,762	-				+0.4
3,922,786	-				+0.9
3,922,786	-				-1.4
3,922,963	-		LU632_RS20590	0.63	-2.7
3,923,027	+		LU632_RS20590	0.85	+0.6
3,923,065	+				+1.8
3,923,065	+				-0.1
3,923,197	+				+1.4
3,923,263	+		LU632_RS20595	0.17	+0.3
3,923,263	+		LU632_RS20595	0.17	+2.3
3,923,263	+		LU632_RS20595	0.17	-1.0
3,923,264	-		LU632_RS20595	0.17	+1.5
3,923,283	+		LU632_RS20595	0.19	-0.4
3,923,284	-		LU632_RS20595	0.19	-0.2
3,923,437	+		LU632_RS20595	0.36	-0.4
3,923,438	-		LU632_RS20595	0.36	+2.0
3,923,591	+		LU632_RS20595	0.53	-0.1
3,923,631	+		LU632_RS20595	0.57	+3.0
3,923,644	+		LU632_RS20595	0.59	+1.3
3,923,644	+		LU632_RS20595	0.59	+1.3
3,923,644	+		LU632_RS20595	0.59	-0.1
3,923,644	+		LU632_RS20595	0.59	+2.5
3,923,645	-		LU632_RS20595	0.59	-0.7
3,923,648	+		LU632_RS20595	0.59	+0.2
3,923,648	+		LU632_RS20595	0.59	+0.3
3,923,649	-		LU632_RS20595	0.59	+1.0
3,923,649	-		LU632_RS20595	0.59	+1.2
3,923,649	-		LU632_RS20595	0.59	-0.3
3,923,678	-		LU632_RS20595	0.63	+0.2
3,923,816	+		LU632_RS20595	0.78	-1.9
3,923,831	-		LU632_RS20595	0.79	+0.3
3,923,831	-		LU632_RS20595	0.79	+0.3
3,923,911	+		LU632_RS20595	0.88	+1.1
3,923,923	-		LU632_RS20595	0.90	-0.8
3,923,924	+		LU632_RS20595	0.90	+0.6
3,923,999	+				+1.0
3,923,999	+				+1.9
3,924,015	+				+2.2