Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20495

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,899,698	+		LU632_RS20490	0.20	+1.4
3,899,712	-		LU632_RS20490	0.24	+2.0
3,899,723	+		LU632_RS20490	0.26	-0.5
3,899,724	-		LU632_RS20490	0.26	+2.7
3,899,804	-		LU632_RS20490	0.45	+2.9
3,899,808	-		LU632_RS20490	0.46	+1.0
3,899,808	-		LU632_RS20490	0.46	+2.4
3,899,851	-		LU632_RS20490	0.56	+2.1
3,899,927	+		LU632_RS20490	0.73	+2.2
3,899,928	-		LU632_RS20490	0.74	+2.0
3,899,930	-		LU632_RS20490	0.74	+2.4
3,899,930	-		LU632_RS20490	0.74	+2.3
3,899,966	-		LU632_RS20490	0.82	+0.9
3,899,999	+				+1.3
3,899,999	+				-0.6
3,900,000	-				-0.1
3,900,000	-				-0.2
3,900,002	-				+0.9
3,900,023	-				-1.8
3,900,093	+				+0.5
3,900,169	+		LU632_RS20495	0.21	-1.5
3,900,250	+		LU632_RS20495	0.45	-1.3
3,900,315	+		LU632_RS20495	0.64	-0.2
3,900,316	-		LU632_RS20495	0.65	-0.4
3,900,360	+		LU632_RS20495	0.78	+1.0
3,900,360	+		LU632_RS20495	0.78	-2.0
3,900,360	+		LU632_RS20495	0.78	-1.4
3,900,361	-		LU632_RS20495	0.78	-0.6
3,900,363	-		LU632_RS20495	0.79	+1.0
3,900,392	+		LU632_RS20495	0.87	-1.9
3,900,439	-				+0.4
3,900,444	+				+2.0
3,900,451	+				+1.8
3,900,451	+				+0.3
3,900,532	+				+1.4
3,900,532	+				-0.6
3,900,570	-				-1.0
3,900,574	+				-0.2
3,900,574	+				+0.4
3,900,675	+				-2.6
3,900,676	-				-2.0
3,900,678	+				-2.2
3,900,704	-				-0.4
3,900,704	-				-1.7
3,900,713	+				+0.5
3,900,714	-				-0.0
3,900,714	-				-0.4
3,900,736	+				+1.5
3,900,736	+				+2.5
3,900,737	-				-1.0
3,900,737	-				-1.6
3,900,751	+				+3.0
3,900,752	-				-1.0
3,900,765	+				-0.9
3,900,766	-				+0.4
3,900,817	+				+1.0