Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20340

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,868,983	+	mrdA	LU632_RS20335	0.50	-2.0
3,868,983	+	mrdA	LU632_RS20335	0.50	+1.1
3,868,984	-	mrdA	LU632_RS20335	0.50	+0.0
3,869,005	+	mrdA	LU632_RS20335	0.51	+1.6
3,869,032	+	mrdA	LU632_RS20335	0.52	-0.4
3,869,033	-	mrdA	LU632_RS20335	0.52	-0.1
3,869,033	-	mrdA	LU632_RS20335	0.52	-0.5
3,869,128	+	mrdA	LU632_RS20335	0.57	-0.4
3,869,220	+	mrdA	LU632_RS20335	0.62	-0.7
3,869,221	-	mrdA	LU632_RS20335	0.62	+0.2
3,869,221	-	mrdA	LU632_RS20335	0.62	+1.1
3,869,244	+	mrdA	LU632_RS20335	0.63	-1.8
3,869,247	+	mrdA	LU632_RS20335	0.64	-0.0
3,869,247	+	mrdA	LU632_RS20335	0.64	-1.5
3,869,247	+	mrdA	LU632_RS20335	0.64	-0.4
3,869,248	-	mrdA	LU632_RS20335	0.64	-0.1
3,869,248	-	mrdA	LU632_RS20335	0.64	+2.0
3,869,272	-	mrdA	LU632_RS20335	0.65	-1.1
3,869,291	+	mrdA	LU632_RS20335	0.66	-0.1
3,869,291	+	mrdA	LU632_RS20335	0.66	+1.0
3,869,346	+	mrdA	LU632_RS20335	0.69	-0.5
3,869,346	+	mrdA	LU632_RS20335	0.69	-0.2
3,869,449	-	mrdA	LU632_RS20335	0.74	+0.9
3,869,451	+	mrdA	LU632_RS20335	0.74	+0.3
3,869,499	+	mrdA	LU632_RS20335	0.77	+1.9
3,869,626	-	mrdA	LU632_RS20335	0.84	-0.7
3,869,630	-	mrdA	LU632_RS20335	0.84	-0.4
3,869,630	-	mrdA	LU632_RS20335	0.84	+2.1
3,869,647	+	mrdA	LU632_RS20335	0.85	+1.9
3,869,745	+	mrdA	LU632_RS20335	0.90	+1.5
3,869,752	+				+0.7
3,869,800	-				+0.8
3,869,866	-				-0.1
3,869,923	-				+0.9
3,869,936	-				+1.5
3,869,950	+				-3.0
3,869,950	+				-0.2
3,869,951	-				-0.5
3,869,971	-				-0.4
3,870,027	-				+0.0
3,870,116	+		LU632_RS20340	0.18	-2.7
3,870,116	+		LU632_RS20340	0.18	+0.6
3,870,117	-		LU632_RS20340	0.19	-0.1
3,870,250	+		LU632_RS20340	0.36	+0.1
3,870,296	+		LU632_RS20340	0.42	+0.6
3,870,296	+		LU632_RS20340	0.42	-0.1
3,870,568	+		LU632_RS20340	0.76	+2.3
3,870,569	-		LU632_RS20340	0.77	-0.4
3,870,615	-		LU632_RS20340	0.82	-1.5
3,870,637	+		LU632_RS20340	0.85	-0.9
3,870,671	+		LU632_RS20340	0.90	-1.9
3,870,671	+		LU632_RS20340	0.90	+0.1
3,870,671	+		LU632_RS20340	0.90	+1.1
3,870,712	+				-0.2
3,870,713	-				-0.4
3,870,714	+				-0.3
3,870,714	+				+0.7
3,870,715	-				-0.7
3,870,717	+				+1.8
3,870,718	-				-0.3
3,870,718	-				-0.7
3,870,718	-				-0.1
3,870,718	-				-3.0
3,870,718	-				+0.3
3,870,718	-				+0.3
3,870,807	+				-0.4
3,870,808	-				-0.3
3,870,823	+				-0.4
3,870,982	-		LU632_RS20345	0.23	+0.8
3,871,070	+		LU632_RS20345	0.32	-1.2
3,871,071	-		LU632_RS20345	0.32	-1.2
3,871,071	-		LU632_RS20345	0.32	-2.9
3,871,071	-		LU632_RS20345	0.32	-1.4
3,871,071	-		LU632_RS20345	0.32	-0.7
3,871,071	-		LU632_RS20345	0.32	+0.2
3,871,071	-		LU632_RS20345	0.32	-0.7
3,871,097	-		LU632_RS20345	0.35	+0.3
3,871,104	+		LU632_RS20345	0.36	-0.2
3,871,105	-		LU632_RS20345	0.36	-1.5
3,871,285	-		LU632_RS20345	0.54	+0.7
3,871,323	+		LU632_RS20345	0.58	+0.3
3,871,326	+		LU632_RS20345	0.58	-0.7
3,871,327	-		LU632_RS20345	0.58	-1.5
3,871,351	-		LU632_RS20345	0.60	+0.6
3,871,425	+		LU632_RS20345	0.68	+2.9
3,871,615	-		LU632_RS20345	0.87	+1.0
3,871,702	+				+1.5
3,871,702	+				+0.3
3,871,702	+				-2.1
3,871,702	+				+0.0
3,871,703	-				-0.8
3,871,704	+				-1.1
3,871,704	+				+2.0
3,871,704	+				-0.3
3,871,705	-				+0.3
3,871,705	-				+1.0