Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20260

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,852,228	+		LU632_RS20250	0.71	-0.5
3,852,294	+		LU632_RS20250	0.88	+1.6
3,852,313	+				-0.7
3,852,314	-				+2.4
3,852,351	-				-1.7
3,852,351	-				+1.8
3,852,351	-				-0.8
3,852,411	+				-0.6
3,852,426	+				-1.6
3,852,500	+				-1.7
3,852,500	+				-0.9
3,852,500	+				+0.2
3,852,501	-				-0.9
3,852,501	-				-1.6
3,852,501	-				-0.4
3,852,501	-				-1.8
3,852,596	-				-1.3
3,852,596	-				-1.6
3,852,689	+				-0.3
3,852,742	-				-1.6
3,852,745	-				-0.0
3,852,778	+				-0.9
3,852,904	+				+1.8
3,852,905	-				+0.9
3,852,909	+				+0.1
3,852,909	+				-1.9
3,852,909	+				-1.7
3,852,910	-				+1.8
3,852,992	+				-0.7
3,853,024	+				+1.0
3,853,024	+				-0.6
3,853,024	+				-2.1
3,853,025	-				-0.9
3,853,058	-				+1.0
3,853,058	-				+0.6
3,853,058	-				+2.8
3,853,058	-				+0.5
3,853,077	+				+0.2
3,853,089	+				+3.1
3,853,191	+		LU632_RS20255	0.74	+1.9
3,853,289	+		LU632_RS20260	0.64	-1.9
3,853,290	-		LU632_RS20260	0.65	+0.1
3,853,326	-				-0.7
3,853,338	+				-0.2
3,853,339	-				+0.0
3,853,358	+				+3.8
3,853,358	+				+1.2
3,853,358	+				+1.9
3,853,359	-				+0.5
3,853,437	-				+0.6
3,853,452	-				+0.5
3,853,513	-		LU632_RS20265	0.39	-0.0
3,853,547	-		LU632_RS20265	0.57	-0.0
3,853,679	+				+0.1
3,853,693	+				-0.3
3,853,694	-				+0.5
3,853,694	-				-1.3
3,853,882	+				-0.8
3,853,912	+				+0.2
3,853,912	+				+1.2
3,853,913	-				+1.5
3,853,920	+				+1.0
3,854,185	+				-1.4
3,854,185	+				-0.3
3,854,189	+				+1.0
3,854,189	+				-0.4
3,854,190	-				+0.1
3,854,190	-				-0.9
3,854,190	-				+0.4
3,854,289	+				+0.3