Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19705

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,741,948	-				+2.2
3,741,993	+				+3.1
3,742,084	+				+0.5
3,742,085	-				+2.9
3,742,160	-		LU632_RS19700	0.17	+1.9
3,742,190	+		LU632_RS19700	0.20	+1.5
3,742,190	+		LU632_RS19700	0.20	+0.6
3,742,286	+		LU632_RS19700	0.31	+2.1
3,742,286	+		LU632_RS19700	0.31	+0.9
3,742,286	+		LU632_RS19700	0.31	+2.6
3,742,286	+		LU632_RS19700	0.31	+3.2
3,742,287	-		LU632_RS19700	0.32	+0.4
3,742,287	-		LU632_RS19700	0.32	+1.0
3,742,288	+		LU632_RS19700	0.32	-1.6
3,742,433	+		LU632_RS19700	0.49	+0.2
3,742,456	-		LU632_RS19700	0.51	+1.9
3,742,693	+		LU632_RS19700	0.79	+1.9
3,742,709	-		LU632_RS19700	0.81	-0.1
3,742,777	+		LU632_RS19700	0.89	-1.0
3,742,777	+		LU632_RS19700	0.89	-1.6
3,742,777	+		LU632_RS19700	0.89	-1.2
3,742,778	-		LU632_RS19700	0.89	+0.1
3,742,778	-		LU632_RS19700	0.89	+4.9
3,742,778	-		LU632_RS19700	0.89	+1.9
3,742,858	+				+0.9
3,742,859	-				+0.0
3,742,866	-				+0.9
3,743,197	+	glpK	LU632_RS19705	0.20	+0.9
3,743,273	-	glpK	LU632_RS19705	0.25	+0.9
3,743,275	-	glpK	LU632_RS19705	0.25	+0.5
3,743,527	-	glpK	LU632_RS19705	0.41	+3.0
3,743,699	-	glpK	LU632_RS19705	0.53	+2.9
3,743,715	+	glpK	LU632_RS19705	0.54	+1.9
3,743,728	-	glpK	LU632_RS19705	0.55	+0.5
3,743,804	-	glpK	LU632_RS19705	0.60	-0.1
3,743,804	-	glpK	LU632_RS19705	0.60	+1.2
3,743,933	-	glpK	LU632_RS19705	0.68	+3.3
3,744,061	+	glpK	LU632_RS19705	0.77	-0.5
3,744,151	-	glpK	LU632_RS19705	0.83	-1.1
3,744,529	-				+0.2
3,744,643	-	glpX	LU632_RS19710	0.13	-1.7
3,744,663	+	glpX	LU632_RS19710	0.15	-0.7
3,744,663	+	glpX	LU632_RS19710	0.15	+1.9
3,744,710	-	glpX	LU632_RS19710	0.20	+0.5
3,744,710	-	glpX	LU632_RS19710	0.20	-0.9
3,744,710	-	glpX	LU632_RS19710	0.20	-0.1
3,744,754	-	glpX	LU632_RS19710	0.24	+0.2
3,744,778	-	glpX	LU632_RS19710	0.26	+1.6
3,744,865	+	glpX	LU632_RS19710	0.35	-0.5
3,744,865	+	glpX	LU632_RS19710	0.35	+1.9
3,744,865	+	glpX	LU632_RS19710	0.35	+0.7
3,744,865	+	glpX	LU632_RS19710	0.35	-0.6
3,744,865	+	glpX	LU632_RS19710	0.35	-1.9
3,744,865	+	glpX	LU632_RS19710	0.35	-1.5
3,744,866	-	glpX	LU632_RS19710	0.35	-0.7
3,744,866	-	glpX	LU632_RS19710	0.35	+0.7
3,744,866	-	glpX	LU632_RS19710	0.35	+0.5
3,744,866	-	glpX	LU632_RS19710	0.35	+1.0
3,744,866	-	glpX	LU632_RS19710	0.35	-0.8
3,744,866	-	glpX	LU632_RS19710	0.35	-1.7
3,744,866	-	glpX	LU632_RS19710	0.35	-2.1
3,744,866	-	glpX	LU632_RS19710	0.35	+1.9
3,744,934	-	glpX	LU632_RS19710	0.42	+1.1
3,744,946	-	glpX	LU632_RS19710	0.43	+0.1
3,745,127	-	glpX	LU632_RS19710	0.61	+0.3
3,745,132	-	glpX	LU632_RS19710	0.61	+1.9
3,745,154	+	glpX	LU632_RS19710	0.64	-1.3