Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19550

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,706,871	+				-0.2
3,706,872	-				+0.5
3,706,927	-				+0.1
3,706,928	+				-0.1
3,706,929	-				+0.3
3,706,929	-				-0.6
3,707,034	-				+0.2
3,707,034	-				+4.4
3,707,035	+				+0.5
3,707,058	-				-0.9
3,707,074	+				+0.7
3,707,078	+				-0.2
3,707,079	-				-0.1
3,707,079	-				-0.5
3,707,088	-				-0.6
3,707,088	-				-1.2
3,707,091	-				-1.1
3,707,116	+				-0.9
3,707,151	-				+1.1
3,707,155	-				-0.4
3,707,284	-				+0.7
3,707,314	+				-0.9
3,707,330	-				+0.3
3,707,342	+				-0.9
3,707,372	-				+0.1
3,707,430	-				-1.3
3,707,433	+				+0.3
3,707,433	+				-1.6
3,707,434	-				-0.6
3,707,495	+				-0.5
3,707,496	-				-1.5
3,707,501	-				+0.7
3,707,515	+				-1.5
3,707,515	+				-1.3
3,707,515	+				+2.1
3,707,516	-				-1.4
3,707,531	-				+1.7
3,707,531	-				-0.9
3,707,604	+				-2.0
3,707,604	+				+0.5
3,707,639	+				+0.5
3,707,640	-				-1.3
3,707,826	-	trmA	LU632_RS19550	0.23	+0.0
3,707,846	-	trmA	LU632_RS19550	0.25	+1.4
3,707,864	+	trmA	LU632_RS19550	0.26	-1.3
3,707,919	-	trmA	LU632_RS19550	0.31	-0.1
3,707,926	+	trmA	LU632_RS19550	0.32	-2.5
3,707,981	+	trmA	LU632_RS19550	0.37	+0.8
3,707,982	-	trmA	LU632_RS19550	0.37	-0.6
3,707,985	-	trmA	LU632_RS19550	0.37	-0.9
3,708,110	+	trmA	LU632_RS19550	0.49	+1.4
3,708,110	+	trmA	LU632_RS19550	0.49	+0.7
3,708,111	-	trmA	LU632_RS19550	0.49	-0.1
3,708,111	-	trmA	LU632_RS19550	0.49	-0.1
3,708,111	-	trmA	LU632_RS19550	0.49	+0.5
3,708,162	-	trmA	LU632_RS19550	0.53	+1.1
3,708,162	-	trmA	LU632_RS19550	0.53	+0.2
3,708,240	-	trmA	LU632_RS19550	0.60	+1.1
3,708,264	-	trmA	LU632_RS19550	0.63	-0.7
3,708,321	+	trmA	LU632_RS19550	0.68	+0.3
3,708,322	-	trmA	LU632_RS19550	0.68	-0.5
3,708,338	+	trmA	LU632_RS19550	0.69	+0.1
3,708,445	-	trmA	LU632_RS19550	0.79	-0.2
3,708,533	-	trmA	LU632_RS19550	0.87	+0.9
3,708,534	+	trmA	LU632_RS19550	0.87	+0.3
3,708,534	+	trmA	LU632_RS19550	0.87	-0.6
3,708,535	-	trmA	LU632_RS19550	0.87	+0.9
3,708,536	+	trmA	LU632_RS19550	0.87	+0.1
3,708,633	-				-1.6
3,708,633	-				+1.0
3,708,677	+				+2.0
3,709,116	+		LU632_RS19555	0.39	-0.5
3,709,117	-		LU632_RS19555	0.39	-0.7
3,709,223	+				+0.5
3,709,223	+				+0.6
3,709,223	+				-0.1
3,709,224	-				-0.3
3,709,224	-				+0.7
3,709,224	-				-1.1
3,709,224	-				+1.9
3,709,224	-				+1.5
3,709,266	+				-1.2
3,709,267	-				-0.6
3,709,337	+		LU632_RS19560	0.15	-1.2
3,709,509	-		LU632_RS19560	0.36	-0.1
3,709,509	-		LU632_RS19560	0.36	+1.8
3,709,610	-		LU632_RS19560	0.49	+2.0
3,709,610	-		LU632_RS19560	0.49	+1.0