Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18935

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,572,080	+	sbcD	LU632_RS18930	0.28	-1.8
3,572,080	+	sbcD	LU632_RS18930	0.28	-0.2
3,572,081	-	sbcD	LU632_RS18930	0.28	-0.5
3,572,081	-	sbcD	LU632_RS18930	0.28	+3.3
3,572,157	-	sbcD	LU632_RS18930	0.35	+2.1
3,572,160	-	sbcD	LU632_RS18930	0.35	+0.2
3,572,226	+	sbcD	LU632_RS18930	0.40	-2.0
3,572,349	+	sbcD	LU632_RS18930	0.50	+2.4
3,572,349	+	sbcD	LU632_RS18930	0.50	+1.8
3,572,350	-	sbcD	LU632_RS18930	0.50	+1.8
3,572,350	-	sbcD	LU632_RS18930	0.50	+1.0
3,572,417	+	sbcD	LU632_RS18930	0.56	+1.8
3,572,418	-	sbcD	LU632_RS18930	0.56	-1.4
3,572,454	-	sbcD	LU632_RS18930	0.59	-2.5
3,572,454	-	sbcD	LU632_RS18930	0.59	-0.4
3,572,752	-	sbcD	LU632_RS18930	0.83	-2.9
3,572,810	+	sbcD	LU632_RS18930	0.88	+0.1
3,573,100	+				-1.2
3,573,117	-				-1.6
3,573,117	-				-1.3
3,573,214	-				+0.0
3,573,326	-		LU632_RS18935	0.10	+0.7
3,573,339	+		LU632_RS18935	0.10	+0.8
3,573,339	+		LU632_RS18935	0.10	+0.7
3,573,340	-		LU632_RS18935	0.11	-0.1
3,573,497	+		LU632_RS18935	0.15	+0.7
3,573,497	+		LU632_RS18935	0.15	+1.3
3,573,497	+		LU632_RS18935	0.15	-1.7
3,573,497	+		LU632_RS18935	0.15	-1.0
3,573,498	-		LU632_RS18935	0.15	+2.6
3,573,498	-		LU632_RS18935	0.15	-1.4
3,573,498	-		LU632_RS18935	0.15	-0.8
3,573,498	-		LU632_RS18935	0.15	-2.9
3,573,498	-		LU632_RS18935	0.15	-0.6
3,573,782	-		LU632_RS18935	0.23	-0.2
3,573,859	+		LU632_RS18935	0.25	+0.8
3,573,860	-		LU632_RS18935	0.25	+2.5
3,574,049	-		LU632_RS18935	0.30	-0.2
3,574,092	+		LU632_RS18935	0.31	+1.7
3,574,435	+		LU632_RS18935	0.40	-0.9
3,574,436	-		LU632_RS18935	0.40	-0.1
3,574,436	-		LU632_RS18935	0.40	+0.0
3,575,209	+		LU632_RS18935	0.61	-0.2
3,575,289	+		LU632_RS18935	0.64	+0.2
3,575,289	+		LU632_RS18935	0.64	-0.3
3,575,290	-		LU632_RS18935	0.64	+1.4
3,575,637	+		LU632_RS18935	0.73	-0.5
3,575,638	-		LU632_RS18935	0.73	+1.2
3,575,696	-		LU632_RS18935	0.75	+2.3
3,575,817	+		LU632_RS18935	0.78	-2.2
3,575,818	-		LU632_RS18935	0.78	-0.1
3,576,146	-		LU632_RS18935	0.87	+0.0
3,576,146	-		LU632_RS18935	0.87	+0.5
3,576,241	-		LU632_RS18935	0.89	-1.4
3,576,251	+		LU632_RS18935	0.90	+0.8
3,576,252	-		LU632_RS18935	0.90	-0.4
3,576,253	+		LU632_RS18935	0.90	+1.8
3,576,254	-		LU632_RS18935	0.90	+0.2
3,576,254	-		LU632_RS18935	0.90	+0.2
3,576,302	-				-1.0
3,576,417	+				-1.0
3,576,518	-				-2.6
3,576,528	+				+1.5
3,576,528	+				-0.1
3,576,602	-				+1.0
3,576,659	+				+0.1
3,576,779	-		LU632_RS18940	0.11	-0.6
3,576,864	-		LU632_RS18940	0.24	-1.4
3,576,870	-		LU632_RS18940	0.25	-0.5
3,576,897	-		LU632_RS18940	0.29	-1.4
3,577,007	+		LU632_RS18940	0.47	+0.7
3,577,008	-		LU632_RS18940	0.47	+1.6
3,577,009	+		LU632_RS18940	0.47	+0.2
3,577,009	+		LU632_RS18940	0.47	-1.0
3,577,009	+		LU632_RS18940	0.47	+0.8
3,577,009	+		LU632_RS18940	0.47	+0.0
3,577,010	-		LU632_RS18940	0.47	-2.2
3,577,010	-		LU632_RS18940	0.47	+0.3
3,577,097	+		LU632_RS18940	0.61	+0.1
3,577,132	+		LU632_RS18940	0.66	+3.5
3,577,132	+		LU632_RS18940	0.66	+0.7
3,577,132	+		LU632_RS18940	0.66	+1.2
3,577,132	+		LU632_RS18940	0.66	-0.5
3,577,132	+		LU632_RS18940	0.66	-1.6
3,577,132	+		LU632_RS18940	0.66	+0.6
3,577,132	+		LU632_RS18940	0.66	-0.8
3,577,133	-		LU632_RS18940	0.67	+1.3
3,577,133	-		LU632_RS18940	0.67	+1.3
3,577,133	-		LU632_RS18940	0.67	-0.2
3,577,133	-		LU632_RS18940	0.67	-0.2
3,577,133	-		LU632_RS18940	0.67	-1.6
3,577,133	-		LU632_RS18940	0.67	+0.5
3,577,133	-		LU632_RS18940	0.67	+0.1
3,577,133	-		LU632_RS18940	0.67	+0.2
3,577,135	+		LU632_RS18940	0.67	-2.1
3,577,135	+		LU632_RS18940	0.67	-1.5
3,577,135	+		LU632_RS18940	0.67	-0.8
3,577,135	+		LU632_RS18940	0.67	+2.4
3,577,135	+		LU632_RS18940	0.67	+0.2
3,577,135	+		LU632_RS18940	0.67	-0.5
3,577,135	+		LU632_RS18940	0.67	+0.8
3,577,136	-		LU632_RS18940	0.67	-0.2
3,577,136	-		LU632_RS18940	0.67	+0.1
3,577,136	-		LU632_RS18940	0.67	+0.7
3,577,136	-		LU632_RS18940	0.67	+2.0
3,577,137	+		LU632_RS18940	0.67	-2.3
3,577,137	+		LU632_RS18940	0.67	-1.3
3,577,137	+		LU632_RS18940	0.67	+0.3
3,577,137	+		LU632_RS18940	0.67	+1.8
3,577,138	-		LU632_RS18940	0.67	+1.5
3,577,138	-		LU632_RS18940	0.67	-0.5
3,577,138	-		LU632_RS18940	0.67	-0.9
3,577,138	-		LU632_RS18940	0.67	-1.4
3,577,138	-		LU632_RS18940	0.67	-1.4
3,577,138	-		LU632_RS18940	0.67	-1.2
3,577,362	+				-0.4
3,577,366	+				-0.9
3,577,464	+		LU632_RS18945	0.33	+0.5
3,577,465	-		LU632_RS18945	0.33	+0.2
3,577,465	-		LU632_RS18945	0.33	+2.9
3,577,555	-		LU632_RS18945	0.62	-0.7
3,577,561	-		LU632_RS18945	0.64	+0.4
3,577,566	-		LU632_RS18945	0.66	+0.4
3,577,571	+		LU632_RS18945	0.68	-0.2
3,577,572	-		LU632_RS18945	0.68	-0.8