Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18900

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,564,500	-	brnQ	LU632_RS18890	0.58	+0.8
3,564,571	-	brnQ	LU632_RS18890	0.64	-0.1
3,564,571	-	brnQ	LU632_RS18890	0.64	-0.1
3,564,667	+	brnQ	LU632_RS18890	0.71	+0.0
3,564,668	-	brnQ	LU632_RS18890	0.71	-1.6
3,564,672	-	brnQ	LU632_RS18890	0.72	+0.1
3,564,777	+	brnQ	LU632_RS18890	0.80	-0.5
3,564,939	-				-1.4
3,565,040	+				-1.7
3,565,092	-				+1.0
3,565,092	-				-1.9
3,565,092	-				-1.1
3,565,156	-		LU632_RS18895	0.13	+0.5
3,565,272	+		LU632_RS18895	0.76	-0.2
3,565,273	-		LU632_RS18895	0.76	-1.9
3,565,273	-		LU632_RS18895	0.76	-0.6
3,565,433	+				+0.1
3,565,433	+				+0.3
3,565,434	-				-0.2
3,565,562	+		LU632_RS18900	0.12	-0.3
3,565,582	-		LU632_RS18900	0.14	-0.1
3,565,669	-		LU632_RS18900	0.22	+0.2
3,565,837	+		LU632_RS18900	0.37	-1.0
3,565,862	+		LU632_RS18900	0.40	-1.0
3,565,879	+		LU632_RS18900	0.41	-2.0
3,565,879	+		LU632_RS18900	0.41	+0.4
3,565,880	-		LU632_RS18900	0.41	-2.0
3,565,982	-		LU632_RS18900	0.51	+3.4
3,566,156	+		LU632_RS18900	0.67	+1.0
3,566,168	-		LU632_RS18900	0.68	+0.8
3,566,238	-		LU632_RS18900	0.74	-0.2
3,566,264	-		LU632_RS18900	0.77	+1.6
3,566,392	+		LU632_RS18900	0.88	-2.0
3,566,392	+		LU632_RS18900	0.88	+2.5
3,566,796	-		LU632_RS18905	0.11	+2.9
3,567,251	-		LU632_RS18910	0.35	+0.4
3,567,251	-		LU632_RS18910	0.35	+0.3
3,567,311	-		LU632_RS18910	0.47	-0.4