Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18890

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,562,754	+	proY	LU632_RS18885	0.33	-0.8
3,562,832	-	proY	LU632_RS18885	0.39	-1.9
3,562,887	+	proY	LU632_RS18885	0.43	+0.8
3,562,898	-	proY	LU632_RS18885	0.44	-0.2
3,562,920	+	proY	LU632_RS18885	0.46	+1.9
3,562,952	-	proY	LU632_RS18885	0.48	+1.8
3,563,252	-	proY	LU632_RS18885	0.70	+0.6
3,563,261	-	proY	LU632_RS18885	0.71	-1.5
3,563,261	-	proY	LU632_RS18885	0.71	-0.5
3,563,322	+	proY	LU632_RS18885	0.75	+1.7
3,563,323	-	proY	LU632_RS18885	0.75	+1.1
3,563,377	-	proY	LU632_RS18885	0.79	+0.4
3,563,392	+	proY	LU632_RS18885	0.80	-0.7
3,563,392	+	proY	LU632_RS18885	0.80	+0.2
3,563,392	+	proY	LU632_RS18885	0.80	-0.4
3,563,392	+	proY	LU632_RS18885	0.80	+2.1
3,563,392	+	proY	LU632_RS18885	0.80	+0.8
3,563,392	+	proY	LU632_RS18885	0.80	-0.5
3,563,394	+	proY	LU632_RS18885	0.81	-0.3
3,563,416	-	proY	LU632_RS18885	0.82	+0.8
3,563,488	+	proY	LU632_RS18885	0.88	-0.2
3,563,494	-	proY	LU632_RS18885	0.88	-0.9
3,563,515	+	proY	LU632_RS18885	0.90	+2.7
3,563,515	+	proY	LU632_RS18885	0.90	-1.9
3,563,568	+				+2.7
3,563,628	-				+0.2
3,563,708	-				-2.0
3,563,716	+				-0.7
3,563,765	-				-0.4
3,563,779	-				+0.1
3,563,784	+				-1.0
3,563,786	+				-0.8
3,563,786	+				+2.2
3,563,787	-				-1.0
3,563,787	-				+0.4
3,563,787	-				-0.4
3,563,787	-				+0.8
3,563,787	-				-2.1
3,564,115	+	brnQ	LU632_RS18890	0.29	-0.9
3,564,116	-	brnQ	LU632_RS18890	0.29	-0.3
3,564,168	-	brnQ	LU632_RS18890	0.33	-0.7
3,564,168	-	brnQ	LU632_RS18890	0.33	-0.5
3,564,299	+	brnQ	LU632_RS18890	0.43	-0.1
3,564,299	+	brnQ	LU632_RS18890	0.43	+0.2
3,564,313	+	brnQ	LU632_RS18890	0.44	-0.8
3,564,407	+	brnQ	LU632_RS18890	0.51	-0.7
3,564,408	-	brnQ	LU632_RS18890	0.51	+0.9
3,564,408	-	brnQ	LU632_RS18890	0.51	+1.4
3,564,410	+	brnQ	LU632_RS18890	0.51	-1.5
3,564,410	+	brnQ	LU632_RS18890	0.51	+0.2
3,564,416	+	brnQ	LU632_RS18890	0.52	-1.0
3,564,416	+	brnQ	LU632_RS18890	0.52	-1.2
3,564,417	-	brnQ	LU632_RS18890	0.52	-1.5
3,564,417	-	brnQ	LU632_RS18890	0.52	-1.7
3,564,500	-	brnQ	LU632_RS18890	0.58	+0.8
3,564,571	-	brnQ	LU632_RS18890	0.64	-0.1
3,564,571	-	brnQ	LU632_RS18890	0.64	-0.1
3,564,667	+	brnQ	LU632_RS18890	0.71	+0.0
3,564,668	-	brnQ	LU632_RS18890	0.71	-1.6
3,564,672	-	brnQ	LU632_RS18890	0.72	+0.1
3,564,777	+	brnQ	LU632_RS18890	0.80	-0.5
3,564,939	-				-1.4
3,565,040	+				-1.7
3,565,092	-				+1.0
3,565,092	-				-1.9
3,565,092	-				-1.1
3,565,156	-		LU632_RS18895	0.13	+0.5
3,565,272	+		LU632_RS18895	0.76	-0.2
3,565,273	-		LU632_RS18895	0.76	-1.9
3,565,273	-		LU632_RS18895	0.76	-0.6
3,565,433	+				+0.1
3,565,433	+				+0.3
3,565,434	-				-0.2
3,565,562	+		LU632_RS18900	0.12	-0.3
3,565,582	-		LU632_RS18900	0.14	-0.1
3,565,669	-		LU632_RS18900	0.22	+0.2
3,565,837	+		LU632_RS18900	0.37	-1.0
3,565,862	+		LU632_RS18900	0.40	-1.0
3,565,879	+		LU632_RS18900	0.41	-2.0
3,565,879	+		LU632_RS18900	0.41	+0.4
3,565,880	-		LU632_RS18900	0.41	-2.0
3,565,982	-		LU632_RS18900	0.51	+3.4