Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18870

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,558,280	+	tnpA	LU632_RS18865	0.38	-1.5
3,558,292	+	tnpA	LU632_RS18865	0.42	+0.5
3,558,330	-	tnpA	LU632_RS18865	0.56	+0.7
3,558,507	-				+0.9
3,558,563	+				+0.1
3,558,563	+				+0.6
3,558,563	+				+0.1
3,558,564	-				-1.8
3,559,796	+				-0.6
3,559,796	+				-0.4
3,559,847	-				+0.1
3,560,082	-		LU632_RS18875	0.18	-0.7