Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18180

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,433,748	+				+0.0
3,433,748	+				-1.0
3,433,749	-				+0.9
3,433,751	-				+0.3
3,433,801	+	rsmS	LU632_RS18170	0.18	-1.6
3,433,801	+	rsmS	LU632_RS18170	0.18	-0.1
3,433,819	+	rsmS	LU632_RS18170	0.29	-1.3
3,433,819	+	rsmS	LU632_RS18170	0.29	+0.9
3,433,820	-	rsmS	LU632_RS18170	0.30	-1.2
3,433,894	-	rsmS	LU632_RS18170	0.78	-1.6
3,433,962	-				-1.2
3,433,966	+				+1.5
3,433,976	+				+1.4
3,434,069	-	acrR	LU632_RS18175	0.22	+1.5
3,434,121	-	acrR	LU632_RS18175	0.31	+0.2
3,434,155	-	acrR	LU632_RS18175	0.36	-2.0
3,434,166	+	acrR	LU632_RS18175	0.38	+0.6
3,434,166	+	acrR	LU632_RS18175	0.38	-2.8
3,434,167	-	acrR	LU632_RS18175	0.38	+0.2
3,434,167	-	acrR	LU632_RS18175	0.38	-0.5
3,434,167	-	acrR	LU632_RS18175	0.38	+1.1
3,434,167	-	acrR	LU632_RS18175	0.38	+0.2
3,434,168	+	acrR	LU632_RS18175	0.38	+0.4
3,434,168	+	acrR	LU632_RS18175	0.38	+0.8
3,434,168	+	acrR	LU632_RS18175	0.38	+0.6
3,434,168	+	acrR	LU632_RS18175	0.38	-0.7
3,434,168	+	acrR	LU632_RS18175	0.38	-0.1
3,434,169	+	acrR	LU632_RS18175	0.38	+0.1
3,434,169	-	acrR	LU632_RS18175	0.38	+2.1
3,434,169	-	acrR	LU632_RS18175	0.38	+3.1
3,434,169	-	acrR	LU632_RS18175	0.38	-0.6
3,434,169	-	acrR	LU632_RS18175	0.38	+1.1
3,434,169	-	acrR	LU632_RS18175	0.38	-0.2
3,434,221	+	acrR	LU632_RS18175	0.46	-0.2
3,434,230	+	acrR	LU632_RS18175	0.48	-0.7
3,434,381	+	acrR	LU632_RS18175	0.71	-0.5
3,434,382	-	acrR	LU632_RS18175	0.71	-0.4
3,434,480	+	acrR	LU632_RS18175	0.86	+0.6
3,434,481	-	acrR	LU632_RS18175	0.87	-2.3
3,434,518	+				+0.9
3,434,578	+				-1.7
3,434,594	+				-0.3
3,434,595	-				-0.2
3,434,599	-				+0.2
3,434,612	+				-0.9
3,434,613	-				-0.1
3,434,616	+				-0.6
3,434,630	+				-0.6
3,434,632	+				-0.9
3,434,632	+				-0.2
3,434,662	+				-2.5
3,434,663	-				-1.9