Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18160

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,433,273	+				-1.0
3,433,358	+		LU632_RS18165	0.23	-0.9
3,433,358	+		LU632_RS18165	0.23	-1.2
3,433,394	+		LU632_RS18165	0.34	-0.7
3,433,394	+		LU632_RS18165	0.34	+0.4
3,433,395	-		LU632_RS18165	0.35	-1.7
3,433,574	+		LU632_RS18165	0.88	-0.0
3,433,574	+		LU632_RS18165	0.88	+1.3
3,433,575	-		LU632_RS18165	0.89	+4.1
3,433,575	-		LU632_RS18165	0.89	+1.3
3,433,611	-				+1.1
3,433,696	+				+0.6
3,433,748	+				+0.0
3,433,748	+				-1.0
3,433,749	-				+0.9
3,433,751	-				+0.3
3,433,801	+	rsmS	LU632_RS18170	0.18	-1.6
3,433,801	+	rsmS	LU632_RS18170	0.18	-0.1
3,433,819	+	rsmS	LU632_RS18170	0.29	-1.3
3,433,819	+	rsmS	LU632_RS18170	0.29	+0.9
3,433,820	-	rsmS	LU632_RS18170	0.30	-1.2
3,433,894	-	rsmS	LU632_RS18170	0.78	-1.6
3,433,962	-				-1.2
3,433,966	+				+1.5
3,433,976	+				+1.4
3,434,069	-	acrR	LU632_RS18175	0.22	+1.5
3,434,121	-	acrR	LU632_RS18175	0.31	+0.2