Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17645

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,313,605	-				-2.3
3,313,608	+				+1.5
3,313,608	+				-2.5
3,313,608	+				+0.2
3,313,609	-				+0.5
3,313,684	-				-1.2
3,313,684	-				+0.2
3,313,688	-				+0.9
3,313,688	-				-0.8
3,314,547	+				-0.6
3,314,547	+				+1.0
3,314,747	+		LU632_RS17645	0.74	-1.0
3,314,775	+		LU632_RS17645	0.86	-1.5
3,314,799	-				-0.0
3,314,804	-				-2.6
3,314,827	+				-0.0
3,314,827	+				-0.9
3,314,914	+				-0.2
3,314,944	-				+0.2
3,314,944	-				-0.2
3,315,023	-		LU632_RS17650	0.32	+1.9
3,315,168	+		LU632_RS17650	0.83	-0.7
3,315,209	+				+1.2
3,315,209	+				-2.5
3,315,348	+				+1.1
3,315,558	+		LU632_RS17655	0.66	+0.2
3,315,663	+				-0.9
3,315,664	-				-0.5
3,315,665	+				-1.3
3,315,665	+				+0.6
3,315,665	+				-0.3
3,315,673	+				+0.8
3,315,718	+				+0.1
3,315,723	+				-1.3
3,315,723	+				-0.2
3,315,727	+				-0.3
3,315,727	+				-3.2
3,315,728	-				-0.5
3,315,729	+				-2.0
3,315,730	-				+1.0