Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17580

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,301,218	-				+0.2
3,301,244	+		LU632_RS17575	0.11	-0.8
3,301,276	+		LU632_RS17575	0.14	-2.7
3,301,277	-		LU632_RS17575	0.14	+0.2
3,301,306	-		LU632_RS17575	0.17	-0.4
3,301,308	+		LU632_RS17575	0.17	+1.4
3,301,309	-		LU632_RS17575	0.17	-1.2
3,301,309	-		LU632_RS17575	0.17	+0.7
3,301,313	-		LU632_RS17575	0.18	-1.2
3,301,384	-		LU632_RS17575	0.24	+1.2
3,301,384	-		LU632_RS17575	0.24	+0.5
3,301,384	-		LU632_RS17575	0.24	-0.2
3,301,440	+		LU632_RS17575	0.30	+0.1
3,301,441	-		LU632_RS17575	0.30	+0.6
3,301,446	+		LU632_RS17575	0.31	+0.2
3,301,447	-		LU632_RS17575	0.31	+0.2
3,301,549	-		LU632_RS17575	0.41	-1.2
3,301,549	-		LU632_RS17575	0.41	-0.4
3,301,826	-		LU632_RS17575	0.68	-0.9
3,301,870	-		LU632_RS17575	0.72	-1.9
3,301,915	+		LU632_RS17575	0.77	-0.7
3,301,941	+		LU632_RS17575	0.79	-2.7
3,301,942	-		LU632_RS17575	0.79	-0.1
3,301,942	-		LU632_RS17575	0.79	-0.1
3,301,945	-		LU632_RS17575	0.80	-0.8
3,301,945	-		LU632_RS17575	0.80	-1.1
3,301,947	+		LU632_RS17575	0.80	-0.8
3,301,947	+		LU632_RS17575	0.80	+2.6
3,301,948	-		LU632_RS17575	0.80	-0.9
3,301,948	-		LU632_RS17575	0.80	+0.4
3,301,948	-		LU632_RS17575	0.80	+1.3
3,302,013	-		LU632_RS17575	0.86	-0.2
3,302,013	-		LU632_RS17575	0.86	+0.4
3,302,013	-		LU632_RS17575	0.86	+1.3
3,302,013	-		LU632_RS17575	0.86	-0.6
3,302,019	-		LU632_RS17575	0.87	-1.8
3,302,032	-		LU632_RS17575	0.88	+0.9
3,302,076	-				+0.4
3,302,144	+				+1.6
3,302,144	+				-3.8
3,302,145	-				-1.7
3,302,145	-				-0.2
3,302,145	-				-1.9
3,302,146	+				-2.4
3,302,146	+				+0.5
3,302,146	+				+2.2
3,302,147	-				-0.8
3,302,147	-				+0.7
3,302,147	-				-0.3
3,302,147	-				+0.6
3,302,215	+				+0.4
3,302,396	+	yejF	LU632_RS17580	0.15	-0.3
3,302,396	+	yejF	LU632_RS17580	0.15	+0.9
3,302,396	+	yejF	LU632_RS17580	0.15	+0.2
3,302,424	-	yejF	LU632_RS17580	0.17	+0.2
3,302,459	+	yejF	LU632_RS17580	0.19	-0.1
3,302,697	-	yejF	LU632_RS17580	0.34	+1.6
3,302,765	+	yejF	LU632_RS17580	0.39	+0.0
3,302,819	+	yejF	LU632_RS17580	0.42	+1.8
3,302,820	-	yejF	LU632_RS17580	0.42	-1.1
3,302,898	+	yejF	LU632_RS17580	0.47	-2.0
3,302,899	-	yejF	LU632_RS17580	0.47	-1.0
3,302,995	-	yejF	LU632_RS17580	0.53	-0.4
3,303,098	-	yejF	LU632_RS17580	0.60	-0.0
3,303,149	-	yejF	LU632_RS17580	0.63	+1.0
3,303,235	+	yejF	LU632_RS17580	0.68	+2.0
3,303,236	-	yejF	LU632_RS17580	0.68	-1.1
3,303,236	-	yejF	LU632_RS17580	0.68	-0.2
3,303,244	+	yejF	LU632_RS17580	0.69	-0.3
3,303,245	-	yejF	LU632_RS17580	0.69	+1.0
3,303,245	-	yejF	LU632_RS17580	0.69	+0.4
3,303,245	-	yejF	LU632_RS17580	0.69	-0.1
3,303,245	-	yejF	LU632_RS17580	0.69	+0.2
3,303,296	+	yejF	LU632_RS17580	0.72	-0.0
3,303,310	+	yejF	LU632_RS17580	0.73	-0.3
3,303,311	-	yejF	LU632_RS17580	0.73	-0.2
3,303,445	+	yejF	LU632_RS17580	0.82	+0.4
3,303,446	-	yejF	LU632_RS17580	0.82	+0.2
3,303,446	-	yejF	LU632_RS17580	0.82	+2.1
3,303,446	-	yejF	LU632_RS17580	0.82	+1.8
3,303,446	-	yejF	LU632_RS17580	0.82	-1.1
3,303,446	-	yejF	LU632_RS17580	0.82	+0.1
3,303,450	-	yejF	LU632_RS17580	0.82	-1.7
3,303,464	+	yejF	LU632_RS17580	0.83	-0.2
3,303,540	-	yejF	LU632_RS17580	0.88	-1.8
3,303,579	+				-0.6
3,303,607	+				-0.5
3,303,607	+				-1.1
3,303,640	+				-1.1
3,303,641	-				-1.8
3,303,641	-				+0.2
3,303,708	-				-0.3
3,303,727	+				+3.1
3,303,977	-		LU632_RS17585	0.64	+3.8
3,304,092	+				+0.8
3,304,092	+				+1.5
3,304,092	+				-0.2
3,304,093	-				+2.2
3,304,116	+				+1.2
3,304,117	-				+0.3
3,304,117	-				-0.4
3,304,197	-				-0.0
3,304,230	-				+1.5
3,304,327	+				-0.5
3,304,425	+				-0.5
3,304,425	+				-0.5
3,304,426	-				+0.2
3,304,429	+				-1.0
3,304,429	+				+0.8
3,304,429	+				-2.5
3,304,430	-				-0.2
3,304,611	-		LU632_RS17590	0.21	+0.6
3,304,718	-		LU632_RS17590	0.30	+0.0
3,304,718	-		LU632_RS17590	0.30	+1.4
3,304,718	-		LU632_RS17590	0.30	+1.0