Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17500

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,288,779	+				-1.0
3,288,780	-				+0.7
3,288,782	+				-1.0
3,288,783	-				-1.5
3,288,783	-				-0.6
3,288,783	-				+0.2
3,288,785	-				-1.3
3,288,804	-				-1.2
3,288,831	+				-0.0
3,288,832	-				-1.0
3,288,847	+				+0.1
3,288,849	+				+0.3
3,289,158	+	yeiP	LU632_RS17490	0.57	-0.4
3,289,158	+	yeiP	LU632_RS17490	0.57	-0.9
3,289,159	-	yeiP	LU632_RS17490	0.57	+1.3
3,289,159	-	yeiP	LU632_RS17490	0.57	+0.9
3,289,159	-	yeiP	LU632_RS17490	0.57	-1.6
3,289,176	+	yeiP	LU632_RS17490	0.60	-0.1
3,289,285	+	yeiP	LU632_RS17490	0.79	-1.3
3,289,285	+	yeiP	LU632_RS17490	0.79	-1.0
3,289,286	-	yeiP	LU632_RS17490	0.80	+0.6
3,289,286	-	yeiP	LU632_RS17490	0.80	-1.7
3,289,287	+	yeiP	LU632_RS17490	0.80	-1.0
3,289,287	+	yeiP	LU632_RS17490	0.80	-2.1
3,289,405	+				+1.6
3,289,405	+				+1.3
3,289,502	-				-0.5
3,289,538	+				-0.2
3,289,558	+				+0.8
3,289,576	+				+0.9
3,289,577	-				+0.2
3,289,577	-				+0.3
3,289,593	+				-1.8
3,289,593	+				-0.6
3,289,594	-				-0.9
3,289,622	+		LU632_RS17495	0.25	-1.8
3,289,623	-		LU632_RS17495	0.26	+0.5
3,289,623	-		LU632_RS17495	0.26	-1.0
3,289,686	+		LU632_RS17495	0.74	+1.1
3,289,689	-		LU632_RS17495	0.77	-2.1
3,289,689	-		LU632_RS17495	0.77	+0.2
3,289,755	+				-0.2
3,289,755	+				+0.8
3,289,755	+				+0.5
3,289,756	-				+1.1
3,289,756	-				+0.3
3,289,863	-		LU632_RS17500	0.42	+0.3
3,289,935	+		LU632_RS17500	0.71	-2.1
3,290,002	+				+0.4