Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17370

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,265,161	+		LU632_RS17360	0.70	+1.5
3,265,162	-		LU632_RS17360	0.70	-0.8
3,265,162	-		LU632_RS17360	0.70	-0.2
3,265,162	-		LU632_RS17360	0.70	+2.5
3,265,201	+		LU632_RS17360	0.72	+0.8
3,265,202	-		LU632_RS17360	0.72	-1.0
3,265,202	-		LU632_RS17360	0.72	+2.0
3,265,246	-		LU632_RS17360	0.74	-1.6
3,265,285	+		LU632_RS17360	0.76	+1.2
3,265,294	+		LU632_RS17360	0.77	-0.1
3,265,303	-		LU632_RS17360	0.77	-0.5
3,265,321	+		LU632_RS17360	0.78	-2.6
3,265,321	+		LU632_RS17360	0.78	+0.6
3,265,321	+		LU632_RS17360	0.78	+0.2
3,265,321	+		LU632_RS17360	0.78	+0.2
3,265,321	+		LU632_RS17360	0.78	+0.0
3,265,321	+		LU632_RS17360	0.78	-1.7
3,265,321	+		LU632_RS17360	0.78	-0.9
3,265,322	-		LU632_RS17360	0.78	-0.4
3,265,334	-		LU632_RS17360	0.79	-0.5
3,265,334	-		LU632_RS17360	0.79	-1.4
3,265,380	+		LU632_RS17360	0.81	-1.0
3,265,381	-		LU632_RS17360	0.81	-1.6
3,265,402	-		LU632_RS17360	0.82	+1.5
3,265,402	-		LU632_RS17360	0.82	-2.7
3,265,798	-		LU632_RS17365	0.12	+0.3
3,265,800	+		LU632_RS17365	0.12	+3.3
3,265,849	-		LU632_RS17365	0.30	+0.6
3,266,151	-				-0.8
3,266,157	-				-0.1
3,266,204	+		LU632_RS17370	0.26	-0.8
3,266,243	-		LU632_RS17370	0.45	-1.4
3,266,347	-				+1.2
3,266,358	+				-1.1
3,266,358	+				+0.0
3,266,361	+				+0.6
3,266,365	-				-0.7
3,266,429	+		LU632_RS17375	0.11	+0.3
3,266,475	-		LU632_RS17375	0.19	-0.4
3,266,658	+		LU632_RS17375	0.48	-0.8
3,266,658	+		LU632_RS17375	0.48	+0.2
3,266,659	-		LU632_RS17375	0.49	+1.3
3,266,659	-		LU632_RS17375	0.49	+1.1
3,266,756	+		LU632_RS17375	0.64	+0.0
3,266,757	-		LU632_RS17375	0.65	+0.8
3,266,757	-		LU632_RS17375	0.65	-1.1
3,266,757	-		LU632_RS17375	0.65	-0.3
3,266,850	+		LU632_RS17375	0.80	-0.2
3,266,850	+		LU632_RS17375	0.80	-0.9
3,266,850	+		LU632_RS17375	0.80	+0.4
3,266,851	-		LU632_RS17375	0.80	-1.6
3,266,851	-		LU632_RS17375	0.80	-0.2
3,266,861	+		LU632_RS17375	0.81	-0.4
3,266,861	+		LU632_RS17375	0.81	-0.2
3,266,862	-		LU632_RS17375	0.82	+3.1
3,266,862	-		LU632_RS17375	0.82	-0.1
3,266,862	-		LU632_RS17375	0.82	-1.7
3,266,862	-		LU632_RS17375	0.82	-1.6
3,266,862	-		LU632_RS17375	0.82	+0.3
3,266,862	-		LU632_RS17375	0.82	+0.8
3,266,954	-				+0.8
3,266,957	+				+0.2
3,266,957	+				+1.6
3,266,976	+				-0.6
3,266,976	+				-0.3
3,266,983	-				-1.0
3,266,983	-				+1.5
3,266,999	+				+0.2
3,267,077	-		LU632_RS17380	0.17	-2.9
3,267,225	+		LU632_RS17380	0.58	+0.2
3,267,226	-		LU632_RS17380	0.59	+0.3
3,267,226	-		LU632_RS17380	0.59	-0.1
3,267,227	+		LU632_RS17380	0.59	-0.2
3,267,228	-		LU632_RS17380	0.59	-2.7
3,267,228	-		LU632_RS17380	0.59	-2.0
3,267,228	-		LU632_RS17380	0.59	-0.5
3,267,228	-		LU632_RS17380	0.59	-0.1
3,267,248	-		LU632_RS17380	0.65	-0.5
3,267,291	+		LU632_RS17380	0.77	-0.1
3,267,291	+		LU632_RS17380	0.77	-2.0
3,267,291	+		LU632_RS17380	0.77	+1.5
3,267,292	-		LU632_RS17380	0.77	+0.9
3,267,326	-		LU632_RS17380	0.87	-0.2