Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17265

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,243,630	+				+1.1
3,243,740	-		LU632_RS17260	0.33	+0.7
3,243,741	+		LU632_RS17260	0.34	+0.3
3,243,742	-		LU632_RS17260	0.35	+0.0
3,243,742	-		LU632_RS17260	0.35	-0.8
3,243,742	-		LU632_RS17260	0.35	-0.4
3,243,769	+		LU632_RS17260	0.51	-1.4
3,243,771	+		LU632_RS17260	0.52	+0.2
3,243,772	-		LU632_RS17260	0.53	+0.3
3,243,848	-				-2.8
3,243,848	-				-0.2
3,243,913	-		LU632_RS17265	0.33	-1.0
3,244,009	-		LU632_RS17265	0.89	-1.3
3,244,055	+				+0.4
3,244,055	+				-1.2
3,244,056	-				-0.2
3,244,122	+				-3.0
3,244,125	+				-1.0
3,244,126	-				+1.5
3,244,128	+				-0.2
3,244,128	+				-0.3
3,244,129	-				+0.4
3,244,154	+				-2.0
3,244,154	+				-0.8
3,244,155	-				-3.2
3,244,155	-				-0.2
3,244,156	+				+0.7
3,244,157	-				+0.1
3,244,157	-				-0.0
3,244,282	+				-1.4
3,244,283	-				+2.3
3,244,283	-				-0.8
3,244,283	-				-1.0
3,244,286	+				+0.5
3,244,286	+				+1.2
3,244,287	-				+1.1
3,244,287	-				-0.6
3,244,287	-				+0.4
3,244,287	-				-0.5
3,244,287	-				-2.0
3,244,339	-				+0.9
3,244,339	-				+0.4
3,244,469	-		LU632_RS17270	0.13	-1.6
3,244,597	+		LU632_RS17270	0.24	-0.3
3,244,739	-		LU632_RS17270	0.37	+1.0
3,244,739	-		LU632_RS17270	0.37	+0.4
3,244,741	-		LU632_RS17270	0.37	-0.9
3,244,765	+		LU632_RS17270	0.39	+1.6
3,244,804	-		LU632_RS17270	0.42	+0.1
3,244,995	+		LU632_RS17270	0.59	-0.6
3,245,001	+		LU632_RS17270	0.60	-1.8