Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17140

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,225,659	+		LU632_RS17125	0.83	+0.4
3,225,659	+		LU632_RS17125	0.83	+0.9
3,225,724	-		LU632_RS17125	0.87	-0.6
3,225,769	+				+0.2
3,225,808	+				-0.2
3,225,808	+				-0.3
3,225,808	+				-0.6
3,225,809	-				-1.6
3,225,819	+				-1.3
3,225,820	-				+0.6
3,225,900	+				+0.4
3,225,926	+				+1.1
3,225,989	+		LU632_RS17130	0.43	+1.2
3,226,095	+				+0.2
3,226,108	+				+2.0
3,226,150	-		LU632_RS17135	0.12	+0.1
3,226,227	-		LU632_RS17135	0.26	-0.6
3,226,227	-		LU632_RS17135	0.26	+0.6
3,226,230	+		LU632_RS17135	0.26	-0.4
3,226,230	+		LU632_RS17135	0.26	+0.5
3,226,231	-		LU632_RS17135	0.27	-1.8
3,226,231	-		LU632_RS17135	0.27	+0.6
3,226,231	-		LU632_RS17135	0.27	+0.8
3,226,231	-		LU632_RS17135	0.27	-0.8
3,226,319	+		LU632_RS17135	0.43	-1.8
3,226,320	-		LU632_RS17135	0.43	-0.4
3,226,320	-		LU632_RS17135	0.43	-1.8
3,226,355	-		LU632_RS17135	0.49	-0.8
3,226,556	+		LU632_RS17135	0.86	-2.7
3,226,556	+		LU632_RS17135	0.86	+0.4
3,226,557	-		LU632_RS17135	0.87	-2.2
3,226,700	-		LU632_RS17140	0.22	-0.8
3,226,700	-		LU632_RS17140	0.22	-0.6
3,226,700	-		LU632_RS17140	0.22	-0.8
3,226,700	-		LU632_RS17140	0.22	-0.6
3,226,839	-		LU632_RS17140	0.63	-2.4
3,226,863	-		LU632_RS17140	0.70	+1.3
3,227,094	+		LU632_RS17145	0.41	-0.5
3,227,094	+		LU632_RS17145	0.41	+2.3
3,227,188	+		LU632_RS17145	0.68	+0.1
3,227,189	-		LU632_RS17145	0.68	-0.7
3,227,189	-		LU632_RS17145	0.68	+3.1
3,227,206	-		LU632_RS17145	0.73	-0.2
3,227,431	+		LU632_RS17150	0.12	-0.4
3,227,432	-		LU632_RS17150	0.13	+0.6
3,227,435	+		LU632_RS17150	0.13	-1.6
3,227,462	-		LU632_RS17150	0.15	-0.7
3,227,505	-		LU632_RS17150	0.19	-1.6
3,227,564	-		LU632_RS17150	0.25	-1.4
3,227,564	-		LU632_RS17150	0.25	-0.7
3,227,720	+		LU632_RS17150	0.40	-1.9
3,227,721	-		LU632_RS17150	0.40	-1.2
3,227,843	+		LU632_RS17150	0.52	+1.1
3,227,844	-		LU632_RS17150	0.52	-0.2