Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16900

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,182,207	+				-1.4
3,182,208	-				+1.0
3,182,253	+				-1.0
3,182,253	+				-0.1
3,182,257	+				-0.3
3,182,258	-				+0.3
3,182,258	-				+0.2
3,182,258	-				+1.7
3,182,258	-				-1.4
3,182,258	-				-0.2
3,182,260	+				-2.3
3,182,260	+				-1.4
3,182,287	-				+1.2
3,182,334	+		LU632_RS16895	0.14	+0.9
3,182,334	+		LU632_RS16895	0.14	-1.6
3,182,335	-		LU632_RS16895	0.15	-1.5
3,182,335	-		LU632_RS16895	0.15	-0.6
3,182,335	-		LU632_RS16895	0.15	+3.2
3,182,400	+		LU632_RS16895	0.30	+0.2
3,182,401	-		LU632_RS16895	0.30	+0.2
3,182,406	-		LU632_RS16895	0.31	+0.7
3,182,418	+		LU632_RS16895	0.34	+0.0
3,182,540	+		LU632_RS16895	0.63	-2.4
3,182,541	-		LU632_RS16895	0.63	-0.5
3,182,541	-		LU632_RS16895	0.63	+0.3
3,182,543	+		LU632_RS16895	0.64	+0.2
3,182,544	-		LU632_RS16895	0.64	+0.7
3,182,555	-		LU632_RS16895	0.67	+0.0
3,182,587	+		LU632_RS16895	0.74	+2.0
3,182,589	-		LU632_RS16895	0.75	+0.2
3,182,634	+		LU632_RS16895	0.85	+1.3
3,182,635	-		LU632_RS16895	0.86	-0.3
3,182,660	-				-0.7
3,182,660	-				-0.0
3,182,660	-				-0.2
3,182,680	+				+0.6
3,182,681	-				-0.7
3,182,690	-				-2.1
3,182,690	-				+1.2
3,182,696	-				-0.3
3,182,724	+				+0.1
3,182,725	-				+1.6
3,182,726	+				+0.4
3,182,727	-				-0.0
3,182,729	-				+0.8
3,182,729	-				-0.2
3,182,799	-		LU632_RS16900	0.16	-1.1
3,183,033	-		LU632_RS16900	0.49	+1.3
3,183,158	+		LU632_RS16900	0.67	-0.2
3,183,161	+		LU632_RS16900	0.67	+1.3
3,183,212	-		LU632_RS16900	0.75	-0.3
3,183,215	+		LU632_RS16900	0.75	+2.4
3,183,277	-		LU632_RS16900	0.84	-1.9
3,183,279	-		LU632_RS16900	0.84	+1.7
3,183,279	-		LU632_RS16900	0.84	+1.3
3,183,285	-		LU632_RS16900	0.85	+3.7
3,183,327	-				+0.7
3,183,327	-				-2.1
3,183,329	-				+1.7
3,183,330	+				+0.3
3,183,330	+				-0.5
3,183,330	+				-1.9
3,183,330	+				+2.7
3,183,331	-				+1.6
3,183,331	-				-1.4
3,183,331	-				+1.1
3,183,331	-				+2.4
3,183,331	-				+0.4
3,183,333	-				-0.7
3,183,333	-				-1.6
3,183,340	+				+0.7
3,183,341	-				+0.5
3,183,344	+				+0.1
3,183,344	+				-1.7
3,183,411	-				+1.5
3,183,474	-				-0.5
3,184,234	+		LU632_RS16910	0.39	+0.5
3,184,308	+		LU632_RS16910	0.46	+1.5