Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16830

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,169,610	+	proW	LU632_RS16825	0.22	-0.6
3,169,610	+	proW	LU632_RS16825	0.22	+0.4
3,169,614	-	proW	LU632_RS16825	0.22	-0.8
3,169,631	+	proW	LU632_RS16825	0.23	+2.3
3,169,731	+	proW	LU632_RS16825	0.32	+1.2
3,169,731	+	proW	LU632_RS16825	0.32	-0.0
3,169,731	+	proW	LU632_RS16825	0.32	-1.5
3,169,731	+	proW	LU632_RS16825	0.32	-0.8
3,169,732	-	proW	LU632_RS16825	0.32	+2.5
3,169,732	-	proW	LU632_RS16825	0.32	+0.8
3,169,804	+	proW	LU632_RS16825	0.38	+0.9
3,169,991	+	proW	LU632_RS16825	0.54	-0.8
3,169,991	+	proW	LU632_RS16825	0.54	+0.2
3,169,991	+	proW	LU632_RS16825	0.54	-0.3
3,169,991	+	proW	LU632_RS16825	0.54	+0.2
3,169,991	+	proW	LU632_RS16825	0.54	-3.4
3,169,992	-	proW	LU632_RS16825	0.54	+2.5
3,169,992	-	proW	LU632_RS16825	0.54	-1.2
3,170,096	-	proW	LU632_RS16825	0.63	+1.5
3,170,102	+	proW	LU632_RS16825	0.64	+0.7
3,170,103	-	proW	LU632_RS16825	0.64	-0.4
3,170,103	-	proW	LU632_RS16825	0.64	-1.3
3,170,122	+	proW	LU632_RS16825	0.66	-0.2
3,170,122	+	proW	LU632_RS16825	0.66	+0.2
3,170,126	-	proW	LU632_RS16825	0.66	-1.2
3,170,126	-	proW	LU632_RS16825	0.66	+3.2
3,170,144	+	proW	LU632_RS16825	0.67	-1.8
3,170,148	-	proW	LU632_RS16825	0.68	-0.7
3,170,261	+	proW	LU632_RS16825	0.77	-0.6
3,170,399	+	proW	LU632_RS16825	0.89	-2.4
3,170,517	-				+1.5
3,170,527	-				+0.7
3,170,527	-				+0.5
3,170,597	+				+0.1
3,170,598	-				+1.4
3,170,644	-				-0.8
3,170,703	-	proX	LU632_RS16830	0.11	-0.8
3,170,790	+	proX	LU632_RS16830	0.20	+0.5
3,170,791	-	proX	LU632_RS16830	0.20	-1.3
3,170,791	-	proX	LU632_RS16830	0.20	-1.4
3,170,803	-	proX	LU632_RS16830	0.21	-0.4
3,170,871	+	proX	LU632_RS16830	0.28	-0.4
3,170,871	+	proX	LU632_RS16830	0.28	+0.7
3,170,871	+	proX	LU632_RS16830	0.28	-1.6
3,170,872	-	proX	LU632_RS16830	0.28	+0.6
3,170,872	-	proX	LU632_RS16830	0.28	+1.7
3,170,874	-	proX	LU632_RS16830	0.28	-0.8
3,170,912	+	proX	LU632_RS16830	0.32	+1.3
3,170,916	+	proX	LU632_RS16830	0.33	+2.8
3,170,916	+	proX	LU632_RS16830	0.33	+1.9
3,170,916	+	proX	LU632_RS16830	0.33	-0.5
3,170,916	+	proX	LU632_RS16830	0.33	+3.8
3,170,917	-	proX	LU632_RS16830	0.33	+1.7
3,170,951	+	proX	LU632_RS16830	0.36	-1.4
3,170,951	+	proX	LU632_RS16830	0.36	-1.3
3,171,062	+	proX	LU632_RS16830	0.47	-1.2
3,171,112	-	proX	LU632_RS16830	0.52	+0.3
3,171,151	-	proX	LU632_RS16830	0.56	+0.7
3,171,151	-	proX	LU632_RS16830	0.56	+0.2
3,171,151	-	proX	LU632_RS16830	0.56	-0.8
3,171,195	-	proX	LU632_RS16830	0.61	+1.7
3,171,195	-	proX	LU632_RS16830	0.61	-1.8
3,171,208	-	proX	LU632_RS16830	0.62	+2.0
3,171,212	+	proX	LU632_RS16830	0.62	+0.8
3,171,212	+	proX	LU632_RS16830	0.62	+0.3
3,171,212	+	proX	LU632_RS16830	0.62	-0.8
3,171,212	-	proX	LU632_RS16830	0.62	-2.2
3,171,213	-	proX	LU632_RS16830	0.62	+0.7
3,171,213	-	proX	LU632_RS16830	0.62	-0.4
3,171,213	-	proX	LU632_RS16830	0.62	+1.7
3,171,225	+	proX	LU632_RS16830	0.64	+1.2
3,171,290	+	proX	LU632_RS16830	0.70	-0.4
3,171,342	+	proX	LU632_RS16830	0.75	+1.3
3,171,359	+	proX	LU632_RS16830	0.77	-0.2
3,171,359	+	proX	LU632_RS16830	0.77	+1.7
3,171,368	+	proX	LU632_RS16830	0.78	+1.5
3,171,369	-	proX	LU632_RS16830	0.78	-1.6
3,171,500	+				-1.1
3,171,501	-				+1.0
3,171,501	-				-1.4
3,171,501	-				-0.3
3,171,501	-				+0.2
3,171,501	-				+0.2
3,171,636	+				-0.7
3,171,653	+				+2.0
3,171,713	+				+0.3
3,171,713	+				-0.1
3,171,805	-				+0.5
3,171,805	-				-1.1
3,171,809	-				+0.2
3,171,871	-				+1.4
3,172,011	+				-1.3
3,172,012	-				+3.7
3,172,101	-				-0.1
3,172,132	-				-0.9
3,172,132	-				+0.2
3,172,149	+				-1.0
3,172,150	-				-1.0
3,172,166	+				+2.3
3,172,210	+				-1.4
3,172,211	+				-1.2
3,172,216	+				-1.8
3,172,217	-				-0.1
3,172,217	-				-1.1
3,172,238	+				-1.3
3,172,239	-				+0.2
3,172,242	+				+1.0
3,172,242	+				+0.4
3,172,353	+				-0.1
3,172,353	+				+0.0
3,172,354	-				-1.5
3,172,381	+				-1.7
3,172,394	+				+0.4
3,172,394	+				-2.0
3,172,490	+	mprA	LU632_RS16835	0.15	-1.8