Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16455

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,112,968	-				-0.6
3,112,973	+				+0.6
3,112,985	-				+0.7
3,113,095	+		LU632_RS16450	0.18	-0.7
3,113,176	-		LU632_RS16450	0.51	-0.2
3,113,176	-		LU632_RS16450	0.51	-1.0
3,113,176	-		LU632_RS16450	0.51	-1.7
3,113,267	+		LU632_RS16450	0.88	+0.0
3,113,337	-				+1.6
3,113,354	+				-0.3
3,113,355	-				-0.7
3,113,355	-				-1.0
3,113,356	+				+0.2
3,113,356	+				+0.5
3,113,357	-				+0.8
3,113,361	-				-0.7
3,113,422	-				-1.9
3,113,534	+				+0.7
3,113,571	-				-1.3
3,113,571	-				-1.1
3,113,592	+				+1.0
3,113,592	+				-1.7
3,113,623	+				+1.7
3,113,624	-				-2.2
3,113,624	-				+0.3
3,113,628	+				-3.1
3,113,628	+				-0.0
3,113,674	-				+1.3
3,114,063	-		LU632_RS16455	0.43	+0.2
3,114,063	-		LU632_RS16455	0.43	-0.3
3,114,569	+				+0.8
3,114,580	-				-0.9
3,114,800	+				+3.4
3,114,811	-				+0.4