Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16225

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,067,511	+		LU632_RS16220	0.65	-0.4
3,067,532	+		LU632_RS16220	0.66	+1.6
3,067,567	+		LU632_RS16220	0.68	-1.6
3,067,612	-		LU632_RS16220	0.69	-1.4
3,067,768	+		LU632_RS16220	0.75	-0.9
3,067,769	-		LU632_RS16220	0.75	+0.1
3,067,802	-		LU632_RS16220	0.76	-2.2
3,067,802	-		LU632_RS16220	0.76	-0.4
3,067,826	-		LU632_RS16220	0.77	-1.2
3,067,864	+		LU632_RS16220	0.79	+3.0
3,067,954	-		LU632_RS16220	0.82	-1.1
3,067,999	+		LU632_RS16220	0.84	+1.0
3,067,999	+		LU632_RS16220	0.84	-0.4
3,068,116	-		LU632_RS16220	0.88	-1.3
3,068,172	+				-0.2
3,068,172	+				-0.3
3,068,172	+				+2.8
3,068,172	+				+0.6
3,068,172	+				+0.6
3,068,173	-				+0.1
3,068,174	+				-1.0
3,068,175	-				+1.4
3,068,175	-				+1.1
3,068,175	-				-1.5
3,068,175	-				-1.2
3,068,175	-				+1.7
3,068,310	+				-1.1
3,068,397	+				+0.2
3,068,401	+				-1.9
3,068,401	+				+1.7
3,068,401	+				-0.6
3,068,402	-				+0.4
3,068,402	-				+0.7
3,068,403	+				-2.3
3,068,629	-				+0.2
3,068,629	-				-0.5
3,068,630	+				+2.3
3,068,631	-				+0.2
3,068,631	-				+1.1
3,068,631	-				+0.6
3,068,785	-				-0.4
3,068,842	-		LU632_RS16230	0.12	-0.5
3,068,842	-		LU632_RS16230	0.12	+1.3
3,068,852	+		LU632_RS16230	0.12	+1.2
3,068,934	+		LU632_RS16230	0.18	+0.1
3,068,934	+		LU632_RS16230	0.18	+0.4
3,068,934	+		LU632_RS16230	0.18	+1.3
3,068,935	-		LU632_RS16230	0.18	-1.0
3,068,935	-		LU632_RS16230	0.18	-1.4
3,069,048	-		LU632_RS16230	0.26	+0.8
3,069,065	-		LU632_RS16230	0.28	-1.8
3,069,088	+		LU632_RS16230	0.29	+0.3
3,069,217	+		LU632_RS16230	0.38	-4.0
3,069,217	+		LU632_RS16230	0.38	-2.9
3,069,221	-		LU632_RS16230	0.39	+1.5
3,069,221	-		LU632_RS16230	0.39	+0.6
3,069,224	-		LU632_RS16230	0.39	-0.5
3,069,244	+		LU632_RS16230	0.40	+0.8
3,069,311	+		LU632_RS16230	0.45	-0.2
3,069,325	-		LU632_RS16230	0.46	+1.2
3,069,365	+		LU632_RS16230	0.49	-2.3
3,069,453	+		LU632_RS16230	0.55	+0.2
3,069,454	-		LU632_RS16230	0.55	-0.3