Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16130

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,049,223	-	nei	LU632_RS16125	0.13	-0.7
3,049,249	+	nei	LU632_RS16125	0.16	-2.4
3,049,295	-	nei	LU632_RS16125	0.22	-1.0
3,049,301	+	nei	LU632_RS16125	0.23	+0.0
3,049,302	-	nei	LU632_RS16125	0.23	+0.5
3,049,302	-	nei	LU632_RS16125	0.23	-2.5
3,049,509	+	nei	LU632_RS16125	0.49	+0.8
3,049,596	-	nei	LU632_RS16125	0.60	-2.3
3,049,604	-	nei	LU632_RS16125	0.61	+0.4
3,049,604	-	nei	LU632_RS16125	0.61	-0.5
3,049,718	-	nei	LU632_RS16125	0.76	-2.1
3,049,808	-	nei	LU632_RS16125	0.88	-0.3
3,049,907	+				+1.0
3,049,952	+				-0.3
3,049,952	+				+2.0
3,049,952	+				-1.3
3,049,952	+				-0.1
3,049,952	+				-0.9
3,049,953	-				-0.7
3,049,982	+				+0.7
3,049,982	+				+0.3
3,049,983	-				+2.3
3,049,983	-				-1.0
3,050,077	-				+0.3
3,050,097	-				+0.5
3,050,120	-				+0.0
3,050,120	-				-1.4
3,050,179	-				+0.7
3,050,195	+				-2.3
3,050,336	+		LU632_RS16130	0.33	-3.3
3,050,607	+				+1.5
3,050,608	-				-1.2
3,050,608	-				-0.4
3,050,613	-				-0.3
3,050,613	-				+0.8
3,050,718	-				+0.6
3,050,779	+	pxpA	LU632_RS16135	0.14	+0.4
3,050,854	-	pxpA	LU632_RS16135	0.25	-0.0
3,051,082	+	pxpA	LU632_RS16135	0.55	+1.1
3,051,083	-	pxpA	LU632_RS16135	0.56	-0.5
3,051,427	+				-0.5
3,051,492	+		LU632_RS16140	0.10	+0.3
3,051,493	-		LU632_RS16140	0.11	+0.6
3,051,534	-		LU632_RS16140	0.15	-3.3
3,051,569	+		LU632_RS16140	0.19	-2.0