Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16100

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,043,163	-	sucA	LU632_RS16095	0.82	+0.6
3,043,189	-	sucA	LU632_RS16095	0.83	+0.6
3,043,229	-	sucA	LU632_RS16095	0.84	+0.6
3,043,231	+	sucA	LU632_RS16095	0.84	+1.6
3,043,257	-	sucA	LU632_RS16095	0.85	+1.6
3,043,257	-	sucA	LU632_RS16095	0.85	+0.0
3,043,600	-				-0.4
3,043,753	+				+0.9
3,043,754	-				-0.4
3,043,775	-				-1.4
3,043,775	-				-2.1
3,043,775	-				-0.4
3,043,825	-				-2.1
3,043,890	-				-0.1
3,043,921	-				-0.5
3,043,921	-				+1.1
3,043,974	+				-0.7
3,043,989	-				-3.1
3,044,031	+		LU632_RS16100	0.10	+0.6
3,044,031	+		LU632_RS16100	0.10	+0.0
3,044,031	+		LU632_RS16100	0.10	-1.8
3,044,032	-		LU632_RS16100	0.10	+0.9
3,044,229	-		LU632_RS16100	0.38	-2.2
3,044,236	+		LU632_RS16100	0.39	-0.4
3,044,236	+		LU632_RS16100	0.39	-0.7
3,044,237	-		LU632_RS16100	0.39	-2.8
3,044,238	+		LU632_RS16100	0.39	-1.8
3,044,478	-		LU632_RS16100	0.72	-1.5
3,044,634	+				-2.5
3,044,696	-				+1.7
3,044,698	+				+0.6
3,044,699	-				-1.0
3,044,736	-				-2.5
3,044,749	-				-3.2
3,044,931	-	sdhA	LU632_RS16105	0.13	-0.7
3,045,232	-	sdhA	LU632_RS16105	0.30	-1.4
3,045,395	+	sdhA	LU632_RS16105	0.40	-1.7
3,045,395	+	sdhA	LU632_RS16105	0.40	-0.7
3,045,395	+	sdhA	LU632_RS16105	0.40	-0.4
3,045,396	-	sdhA	LU632_RS16105	0.40	-2.6
3,045,396	-	sdhA	LU632_RS16105	0.40	-1.5
3,045,396	-	sdhA	LU632_RS16105	0.40	-0.4
3,045,397	+	sdhA	LU632_RS16105	0.40	-1.2
3,045,398	-	sdhA	LU632_RS16105	0.40	-0.9
3,045,398	-	sdhA	LU632_RS16105	0.40	-2.1
3,045,398	-	sdhA	LU632_RS16105	0.40	-1.8
3,045,398	-	sdhA	LU632_RS16105	0.40	+0.6
3,045,398	-	sdhA	LU632_RS16105	0.40	-2.0
3,045,673	+	sdhA	LU632_RS16105	0.55	-0.7