Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16030

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
3,027,669	+	cpoB	LU632_RS16020	0.46	+0.7
3,027,670	-	cpoB	LU632_RS16020	0.46	+0.3
3,027,670	-	cpoB	LU632_RS16020	0.46	-2.6
3,027,670	-	cpoB	LU632_RS16020	0.46	-1.0
3,027,712	+	cpoB	LU632_RS16020	0.51	-0.4
3,027,831	-	cpoB	LU632_RS16020	0.67	+1.9
3,027,846	+	cpoB	LU632_RS16020	0.68	-1.1
3,027,881	+	cpoB	LU632_RS16020	0.73	+1.2
3,027,881	+	cpoB	LU632_RS16020	0.73	+0.3
3,027,882	-	cpoB	LU632_RS16020	0.73	+1.0
3,027,882	-	cpoB	LU632_RS16020	0.73	+3.0
3,027,882	-	cpoB	LU632_RS16020	0.73	+0.8
3,027,882	-	cpoB	LU632_RS16020	0.73	+1.0
3,027,884	-	cpoB	LU632_RS16020	0.73	+0.3
3,027,950	-	cpoB	LU632_RS16020	0.82	-0.6
3,028,085	-				+0.6
3,028,643	-				+0.4
3,028,651	-				+0.4
3,028,651	-				-1.0
3,029,987	-				+0.5
3,029,991	-				-1.5
3,029,991	-				-0.8
3,030,022	-				-0.7
3,030,022	-				-2.1
3,030,022	-				+1.1
3,030,022	-				+0.5
3,030,022	-				-2.1