Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15415

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
2,918,101	+		LU632_RS15405	0.58	-2.0
2,918,116	-		LU632_RS15405	0.60	-1.3
2,918,408	+				-0.1
2,918,487	-				+1.5
2,918,489	-				-0.9
2,918,503	-				-0.3
2,918,513	+				-2.5
2,918,524	+				-0.4
2,919,152	-	rseB	LU632_RS15415	0.17	-0.4
2,919,253	+	rseB	LU632_RS15415	0.28	+0.6
2,919,254	-	rseB	LU632_RS15415	0.28	-0.7
2,919,353	+	rseB	LU632_RS15415	0.38	+0.6
2,919,390	-	rseB	LU632_RS15415	0.42	-0.4
2,919,396	+	rseB	LU632_RS15415	0.43	-0.4
2,919,396	+	rseB	LU632_RS15415	0.43	+0.0
2,919,513	-	rseB	LU632_RS15415	0.55	+0.0
2,919,513	-	rseB	LU632_RS15415	0.55	-2.0
2,919,513	-	rseB	LU632_RS15415	0.55	-1.5
2,919,598	-	rseB	LU632_RS15415	0.64	-2.0
2,919,626	-	rseB	LU632_RS15415	0.67	-1.2
2,919,626	-	rseB	LU632_RS15415	0.67	+0.6
2,919,643	+	rseB	LU632_RS15415	0.68	+0.0
2,919,735	+	rseB	LU632_RS15415	0.78	-0.4
2,919,743	-	rseB	LU632_RS15415	0.79	-2.3
2,919,790	+	rseB	LU632_RS15415	0.84	-0.4
2,919,795	-	rseB	LU632_RS15415	0.84	-0.7
2,919,795	-	rseB	LU632_RS15415	0.84	+0.0
2,919,801	-	rseB	LU632_RS15415	0.85	-2.4
2,919,805	-	rseB	LU632_RS15415	0.85	+0.0
2,920,333	-	rseA	LU632_RS15420	0.60	+0.8
2,920,340	+	rseA	LU632_RS15420	0.61	-1.2
2,920,635	+				-0.1
2,920,659	+				-2.7
2,920,660	-				-2.6
2,920,678	+				+0.6
2,920,714	-	rpoE	LU632_RS15425	0.16	-1.2
2,920,723	+	rpoE	LU632_RS15425	0.17	-3.0
2,920,724	-	rpoE	LU632_RS15425	0.17	-0.2
2,920,734	-	rpoE	LU632_RS15425	0.19	-1.0
2,920,734	-	rpoE	LU632_RS15425	0.19	-2.5
2,920,771	-	rpoE	LU632_RS15425	0.26	-3.0
2,920,837	+	rpoE	LU632_RS15425	0.37	-0.4
2,920,837	+	rpoE	LU632_RS15425	0.37	-2.7
2,920,838	-	rpoE	LU632_RS15425	0.37	-2.6
2,920,838	-	rpoE	LU632_RS15425	0.37	-1.5
2,920,838	-	rpoE	LU632_RS15425	0.37	-2.4
2,920,838	-	rpoE	LU632_RS15425	0.37	-2.7
2,920,838	-	rpoE	LU632_RS15425	0.37	-3.8
2,920,838	-	rpoE	LU632_RS15425	0.37	-2.0