Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15045

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
2,854,900	+				+0.1
2,854,907	+				-0.7
2,854,957	+				-1.2
2,855,036	+				-0.2
2,855,063	+				-1.0
2,855,063	+				-0.9
2,855,082	+				+2.0
2,855,082	+				-0.7
2,855,083	-				+0.0
2,855,086	+				+1.3
2,855,087	-				-1.9
2,855,094	+				-1.6
2,855,206	+		LU632_RS15035	0.83	-0.3
2,855,207	-		LU632_RS15035	0.84	-1.5
2,855,390	+				+0.2
2,855,391	-				-1.2
2,855,391	-				+1.3
2,855,391	-				-1.5
2,855,391	-				-0.0
2,855,391	-				+0.6
2,855,434	+				-0.4
2,855,435	-				-1.2
2,855,438	+				+0.7
2,855,439	-				-2.4
2,855,460	+		LU632_RS15040	0.13	+0.5
2,855,473	+		LU632_RS15040	0.16	-0.4
2,855,473	+		LU632_RS15040	0.16	-0.7
2,855,473	+		LU632_RS15040	0.16	-0.0
2,855,474	-		LU632_RS15040	0.17	-0.2
2,855,474	-		LU632_RS15040	0.17	-0.2
2,855,517	-		LU632_RS15040	0.28	+1.1
2,855,576	-		LU632_RS15040	0.43	-0.7
2,855,576	-		LU632_RS15040	0.43	-1.0
2,855,613	-		LU632_RS15040	0.52	+1.6
2,855,642	+		LU632_RS15040	0.60	-0.5
2,855,842	+				-0.3
2,855,875	-				-2.0
2,855,908	+				-1.0
2,855,908	+				-2.5
2,856,076	+		LU632_RS15045	0.47	+3.4
2,856,077	-		LU632_RS15045	0.47	+1.4
2,856,089	+		LU632_RS15045	0.50	+0.0
2,856,090	-		LU632_RS15045	0.51	+1.3
2,856,111	+		LU632_RS15045	0.56	+0.3
2,856,187	-		LU632_RS15045	0.75	-0.1
2,856,568	+		LU632_RS15050	0.79	+0.1
2,856,569	-		LU632_RS15050	0.79	+0.6
2,856,582	-		LU632_RS15050	0.83	-1.7
2,856,595	+		LU632_RS15050	0.86	+0.8
2,856,652	+				-0.4
2,856,652	+				+0.2
2,856,652	+				+1.6
2,856,653	-				-0.1
2,856,653	-				-0.2
2,856,653	-				-0.9
2,856,654	+				+2.7
2,856,654	+				-1.7
2,856,655	-				+1.6
2,856,752	+		LU632_RS15055	0.38	+2.0
2,856,769	+		LU632_RS15055	0.44	-0.5
2,856,770	-		LU632_RS15055	0.44	+0.3
2,856,770	-		LU632_RS15055	0.44	-1.4
2,856,770	-		LU632_RS15055	0.44	+0.0
2,856,782	-		LU632_RS15055	0.48	+0.8
2,856,805	+		LU632_RS15055	0.56	-0.2
2,856,890	+		LU632_RS15055	0.85	-0.4
2,856,890	+		LU632_RS15055	0.85	+2.6
2,856,890	+		LU632_RS15055	0.85	+0.0
2,856,891	-		LU632_RS15055	0.85	+0.3
2,856,891	-		LU632_RS15055	0.85	-1.2
2,856,891	-		LU632_RS15055	0.85	-1.0
2,856,892	+		LU632_RS15055	0.85	+1.9
2,856,923	+				-1.6
2,856,923	+				-0.6
2,856,947	-				-0.4
2,856,960	-				+0.6
2,856,960	-				-2.1
2,856,960	-				+0.9
2,856,960	-				+0.1
2,857,106	-				-2.0
2,857,106	-				+0.4
2,857,141	+				-2.4
2,857,143	+				-1.0
2,857,158	-				+0.2
2,857,224	+				+4.1
2,857,225	-				-0.3