Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14910

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
2,835,267	+				-1.0
2,836,023	+				-1.4
2,836,100	+				+0.8
2,836,134	+		LU632_RS14910	0.14	+0.2
2,836,134	+		LU632_RS14910	0.14	-1.0
2,836,134	+		LU632_RS14910	0.14	-0.0
2,836,135	-		LU632_RS14910	0.14	-0.5
2,836,135	-		LU632_RS14910	0.14	+0.3
2,836,136	+		LU632_RS14910	0.14	-0.0
2,836,154	+		LU632_RS14910	0.17	-0.0
2,836,209	-		LU632_RS14910	0.26	-0.7
2,836,295	-		LU632_RS14910	0.39	+0.1
2,836,361	+		LU632_RS14910	0.50	-1.4
2,836,366	-		LU632_RS14910	0.50	+0.6
2,836,368	-		LU632_RS14910	0.51	-0.5
2,836,393	+		LU632_RS14910	0.55	+1.6
2,836,394	-		LU632_RS14910	0.55	+1.6
2,836,414	-		LU632_RS14910	0.58	-2.3
2,836,420	-		LU632_RS14910	0.59	-0.2
2,836,429	+		LU632_RS14910	0.60	+0.9
2,836,429	+		LU632_RS14910	0.60	-0.2
2,836,429	+		LU632_RS14910	0.60	+1.3
2,836,429	+		LU632_RS14910	0.60	-0.0
2,836,430	-		LU632_RS14910	0.60	-0.2
2,836,430	-		LU632_RS14910	0.60	+1.2
2,836,430	-		LU632_RS14910	0.60	-0.2
2,836,430	-		LU632_RS14910	0.60	-2.2
2,836,608	+		LU632_RS14910	0.88	-0.0
2,836,608	+		LU632_RS14910	0.88	-1.2
2,836,629	+				+0.6
2,836,629	+				-0.4
2,836,630	-				-1.3
2,836,662	+				+0.4
2,836,772	+				+1.5
2,836,772	+				+0.6
2,836,773	-				-0.0
2,836,773	-				-1.5
2,836,958	-		LU632_RS14915	0.65	+0.1
2,836,958	-		LU632_RS14915	0.65	-1.6
2,837,185	-				+0.3
2,837,186	+				+1.4
2,837,218	-				-0.4
2,837,218	-				+1.0
2,837,222	+				+0.1
2,837,222	+				+1.1
2,837,276	-		LU632_RS14920	0.14	+0.6
2,837,298	-		LU632_RS14920	0.16	+0.7
2,837,352	+		LU632_RS14920	0.22	+0.0
2,837,386	-		LU632_RS14920	0.26	-1.4
2,837,429	+		LU632_RS14920	0.31	-0.5
2,837,429	+		LU632_RS14920	0.31	-1.0
2,837,430	-		LU632_RS14920	0.31	+2.3
2,837,431	+		LU632_RS14920	0.31	-0.7
2,837,432	-		LU632_RS14920	0.31	-0.8
2,837,432	-		LU632_RS14920	0.31	+0.7
2,837,467	-		LU632_RS14920	0.35	+2.4
2,837,488	-		LU632_RS14920	0.38	-1.4
2,837,539	+		LU632_RS14920	0.43	+0.2
2,837,539	+		LU632_RS14920	0.43	-0.2
2,837,539	+		LU632_RS14920	0.43	-0.7
2,837,540	-		LU632_RS14920	0.44	-0.1
2,837,540	-		LU632_RS14920	0.44	+0.4
2,837,540	-		LU632_RS14920	0.44	-1.0
2,837,562	+		LU632_RS14920	0.46	-0.2
2,837,563	-		LU632_RS14920	0.46	+0.0
2,837,663	+		LU632_RS14920	0.58	+0.3
2,837,663	+		LU632_RS14920	0.58	+0.0
2,837,663	+		LU632_RS14920	0.58	-1.0
2,837,663	+		LU632_RS14920	0.58	-1.9
2,837,664	-		LU632_RS14920	0.58	-0.6