Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14870

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
2,826,809	-				+0.3
2,827,533	+				+2.7
2,827,575	-				-1.7
2,827,682	-				-0.7
2,827,685	-				+1.6
2,827,759	-				-0.2
2,827,839	+		LU632_RS14870	0.23	-1.4
2,827,840	-		LU632_RS14870	0.23	-0.8
2,828,068	-		LU632_RS14870	0.66	-1.6
2,828,068	-		LU632_RS14870	0.66	+0.3
2,828,073	-		LU632_RS14870	0.67	+2.1
2,828,133	-		LU632_RS14870	0.78	-0.2
2,828,159	+		LU632_RS14870	0.83	-2.6
2,828,190	-		LU632_RS14870	0.89	-0.4
2,828,394	-	cbl	LU632_RS14875	0.12	-0.3
2,828,394	-	cbl	LU632_RS14875	0.12	+1.0
2,828,394	-	cbl	LU632_RS14875	0.12	-0.8
2,828,397	+	cbl	LU632_RS14875	0.12	-0.6
2,828,437	-	cbl	LU632_RS14875	0.17	-0.4
2,828,440	-	cbl	LU632_RS14875	0.17	+1.0
2,828,543	+	cbl	LU632_RS14875	0.28	-1.4
2,828,543	+	cbl	LU632_RS14875	0.28	-0.9
2,828,543	+	cbl	LU632_RS14875	0.28	+0.4
2,828,544	-	cbl	LU632_RS14875	0.28	-1.3
2,828,544	-	cbl	LU632_RS14875	0.28	+0.4
2,828,574	+	cbl	LU632_RS14875	0.31	+1.2
2,828,579	-	cbl	LU632_RS14875	0.31	+0.6
2,828,579	-	cbl	LU632_RS14875	0.31	-2.1
2,828,579	-	cbl	LU632_RS14875	0.31	-2.3
2,828,637	+	cbl	LU632_RS14875	0.37	+1.0
2,828,640	+	cbl	LU632_RS14875	0.38	-0.4
2,828,640	+	cbl	LU632_RS14875	0.38	-0.3
2,828,651	+	cbl	LU632_RS14875	0.39	-0.0
2,828,655	+	cbl	LU632_RS14875	0.39	-0.3
2,828,656	-	cbl	LU632_RS14875	0.39	+0.6
2,828,776	+	cbl	LU632_RS14875	0.52	-1.6
2,828,777	-	cbl	LU632_RS14875	0.52	-1.7
2,828,862	+	cbl	LU632_RS14875	0.61	-0.3
2,828,862	+	cbl	LU632_RS14875	0.61	+0.6
2,828,862	+	cbl	LU632_RS14875	0.61	-0.3
2,828,862	+	cbl	LU632_RS14875	0.61	-0.9
2,828,862	+	cbl	LU632_RS14875	0.61	+1.9
2,828,863	-	cbl	LU632_RS14875	0.61	-0.0
2,828,937	+	cbl	LU632_RS14875	0.68	+0.6
2,829,039	+	cbl	LU632_RS14875	0.79	-0.3
2,829,039	+	cbl	LU632_RS14875	0.79	-1.4
2,829,159	+				+0.4
2,829,159	+				-0.9
2,829,183	+				+3.3
2,829,223	-				-2.3