Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14710

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
2,794,929	+		LU632_RS14700	0.74	+2.2
2,794,949	+		LU632_RS14700	0.76	-1.0
2,795,017	+		LU632_RS14700	0.80	+1.7
2,795,017	+		LU632_RS14700	0.80	+0.5
2,795,030	-		LU632_RS14700	0.80	-0.8
2,795,129	-		LU632_RS14700	0.86	-0.7
2,795,237	-				-0.0
2,795,303	+				-2.0
2,795,306	+				-0.8
2,795,442	+				-1.6
2,795,442	+				-2.8
2,795,442	+				+1.9
2,795,443	-				-0.3
2,795,443	-				-0.6
2,795,443	-				+1.2
2,795,443	-				-1.6
2,795,554	+				+1.3
2,795,555	-				-0.8
2,795,555	-				-1.4
2,795,695	+		LU632_RS14705	0.11	-0.4
2,795,765	+		LU632_RS14705	0.53	+1.4
2,795,765	+		LU632_RS14705	0.53	+1.2
2,795,805	-		LU632_RS14705	0.77	+1.2
2,795,960	+		LU632_RS14710	0.18	-0.8
2,796,041	-		LU632_RS14710	0.37	-1.4
2,796,118	+		LU632_RS14710	0.55	-0.9
2,796,288	-				+0.8
2,796,323	-				-0.3
2,796,508	+				-1.2
2,796,508	+				+0.1
2,796,509	-				+0.6
2,796,567	-				-0.6
2,796,574	-				-0.2
2,796,583	-				+1.3
2,796,596	+				+2.2
2,796,597	-				-1.1
2,796,639	+				+2.9
2,796,640	-				+1.4
2,796,663	+				-0.0
2,796,663	+				+1.1
2,796,664	-				+1.0
2,796,681	+		LU632_RS14715	0.10	+0.9
2,796,890	-				+0.8
2,796,891	+				-2.1
2,796,891	+				-0.4
2,796,892	-				+1.1
2,796,892	-				+0.8
2,796,892	-				-0.1
2,796,892	-				+0.6
2,796,892	-				-1.4
2,796,933	+				-1.2
2,796,933	+				-1.1
2,796,933	+				-0.5
2,796,933	+				-0.6
2,796,934	-				+0.0
2,796,980	-				-0.2
2,797,001	+				-0.1
2,797,002	-				+1.1
2,797,031	+				-0.1
2,797,032	-				-1.0
2,797,074	+		LU632_RS14720	0.32	-0.2
2,797,074	+		LU632_RS14720	0.32	+0.6
2,797,075	-		LU632_RS14720	0.33	-0.8
2,797,078	+		LU632_RS14720	0.35	+0.5
2,797,079	-		LU632_RS14720	0.35	+0.7
2,797,138	-		LU632_RS14720	0.69	+0.1
2,797,181	-				-0.8
2,797,220	+				+1.2
2,797,220	+				+0.1
2,797,220	+				+1.0
2,797,262	+		LU632_RS14725	0.12	+0.6
2,797,275	+		LU632_RS14725	0.19	-1.9
2,797,275	+		LU632_RS14725	0.19	+0.4