Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14645

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
2,784,346	+				+0.1
2,784,347	-				+0.2
2,784,416	+				+0.6
2,784,416	+				-0.1
2,784,416	+				+1.6
2,784,416	+				-0.0
2,784,434	+				+2.6
2,784,435	-				+0.8
2,784,435	-				+1.0
2,784,558	-	cobB	LU632_RS14640	0.15	-0.1
2,784,825	+	cobB	LU632_RS14640	0.47	+0.8
2,784,825	+	cobB	LU632_RS14640	0.47	-2.4
2,784,825	+	cobB	LU632_RS14640	0.47	-0.4
2,784,825	+	cobB	LU632_RS14640	0.47	-2.1
2,784,826	-	cobB	LU632_RS14640	0.47	+0.6
2,784,826	-	cobB	LU632_RS14640	0.47	-0.0
2,784,965	-	cobB	LU632_RS14640	0.64	-0.4
2,785,269	+				-1.3
2,785,269	+				-3.0
2,785,278	+				-0.0
2,787,266	-				-1.4