Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14580

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
2,772,141	+				-1.4
2,772,148	+				-0.8
2,772,148	+				-0.0
2,772,296	+	hflD	LU632_RS14580	0.26	-1.2
2,772,296	+	hflD	LU632_RS14580	0.26	+1.0
2,772,297	-	hflD	LU632_RS14580	0.27	+0.2
2,772,496	+	hflD	LU632_RS14580	0.57	-0.1
2,772,496	+	hflD	LU632_RS14580	0.57	-2.2
2,772,496	+	hflD	LU632_RS14580	0.57	-0.4
2,772,507	-	hflD	LU632_RS14580	0.59	-2.0
2,772,511	+	hflD	LU632_RS14580	0.60	-0.9
2,772,534	+	hflD	LU632_RS14580	0.63	-0.7
2,772,535	-	hflD	LU632_RS14580	0.63	-0.9
2,772,547	+	hflD	LU632_RS14580	0.65	-0.0
2,772,548	-	hflD	LU632_RS14580	0.65	-1.9