Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14450

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
2,752,755	-		LU632_RS14445	0.23	-1.9
2,752,767	+		LU632_RS14445	0.24	+1.8
2,752,767	+		LU632_RS14445	0.24	+0.6
2,752,767	+		LU632_RS14445	0.24	+0.6
2,752,768	-		LU632_RS14445	0.24	+0.7
2,752,768	-		LU632_RS14445	0.24	+1.6
2,752,768	-		LU632_RS14445	0.24	-1.2
2,752,796	-		LU632_RS14445	0.27	-0.0
2,753,004	+		LU632_RS14445	0.46	-0.4
2,753,064	+		LU632_RS14445	0.52	-2.0
2,753,064	+		LU632_RS14445	0.52	-0.6
2,753,171	+		LU632_RS14445	0.62	+0.2
2,753,183	+		LU632_RS14445	0.63	-1.1
2,753,184	-		LU632_RS14445	0.63	-0.2
2,753,184	-		LU632_RS14445	0.63	-3.4
2,753,281	-		LU632_RS14445	0.72	-0.0
2,753,281	-		LU632_RS14445	0.72	-0.8
2,753,723	+				+0.2
2,753,724	-				-0.8
2,753,724	-				-1.0
2,753,750	+		LU632_RS14450	0.10	-0.1
2,753,751	-		LU632_RS14450	0.10	-0.0
2,753,839	-		LU632_RS14450	0.15	+0.8
2,753,839	-		LU632_RS14450	0.15	+2.0
2,753,873	-		LU632_RS14450	0.17	-0.4
2,753,897	+		LU632_RS14450	0.19	-0.0
2,754,087	+		LU632_RS14450	0.30	-0.4
2,754,087	+		LU632_RS14450	0.30	-0.0
2,754,089	+		LU632_RS14450	0.30	+0.3
2,754,089	+		LU632_RS14450	0.30	-2.9
2,754,089	+		LU632_RS14450	0.30	+1.7
2,754,090	-		LU632_RS14450	0.30	-2.1
2,754,090	-		LU632_RS14450	0.30	-1.8
2,754,090	-		LU632_RS14450	0.30	-0.1
2,754,090	-		LU632_RS14450	0.30	-0.8
2,754,090	-		LU632_RS14450	0.30	-0.3
2,754,090	-		LU632_RS14450	0.30	+0.3
2,754,090	-		LU632_RS14450	0.30	+1.0
2,754,090	-		LU632_RS14450	0.30	-0.9
2,754,090	-		LU632_RS14450	0.30	+1.1
2,754,090	-		LU632_RS14450	0.30	+0.8
2,754,157	+		LU632_RS14450	0.34	-1.6
2,754,341	+		LU632_RS14450	0.44	-2.7
2,754,357	+		LU632_RS14450	0.45	-1.0
2,754,358	-		LU632_RS14450	0.45	+1.0
2,754,360	+		LU632_RS14450	0.45	+0.2
2,754,360	+		LU632_RS14450	0.45	-1.3
2,754,361	-		LU632_RS14450	0.45	-0.4
2,754,405	-		LU632_RS14450	0.48	-1.4
2,754,429	+		LU632_RS14450	0.49	-0.7
2,754,618	+		LU632_RS14450	0.60	+0.3
2,754,619	-		LU632_RS14450	0.60	-0.5
2,754,980	-		LU632_RS14450	0.81	-0.1
2,755,173	+				+0.6
2,755,227	+				-0.0
2,755,228	-				-0.0
2,755,291	-				-0.2
2,755,480	+		LU632_RS14455	0.21	+0.3
2,755,481	-		LU632_RS14455	0.21	+0.3
2,755,490	+		LU632_RS14455	0.22	+0.8
2,755,519	+		LU632_RS14455	0.25	+0.6
2,755,520	-		LU632_RS14455	0.25	+1.2
2,755,579	+		LU632_RS14455	0.32	-1.6
2,755,620	+		LU632_RS14455	0.37	+2.4
2,755,621	-		LU632_RS14455	0.37	-0.9
2,755,621	-		LU632_RS14455	0.37	+0.0
2,755,648	+		LU632_RS14455	0.40	+0.9
2,755,656	-		LU632_RS14455	0.41	+0.6
2,755,663	+		LU632_RS14455	0.41	+2.1
2,755,664	-		LU632_RS14455	0.42	+0.3
2,755,762	+		LU632_RS14455	0.53	+3.5
2,755,763	-		LU632_RS14455	0.53	-1.9
2,755,854	+		LU632_RS14455	0.63	-1.4
2,755,855	-		LU632_RS14455	0.63	+0.4
2,755,864	+		LU632_RS14455	0.64	-0.2
2,755,865	-		LU632_RS14455	0.64	+2.6
2,755,985	-		LU632_RS14455	0.78	+0.2
2,755,997	-		LU632_RS14455	0.79	+1.0
2,755,997	-		LU632_RS14455	0.79	+1.6
2,755,997	-		LU632_RS14455	0.79	-1.1
2,755,999	-		LU632_RS14455	0.79	-0.9
2,756,153	+				+3.1
2,756,154	-				+4.4
2,756,164	+				+0.5
2,756,165	-				-0.8
2,756,165	-				+0.9
2,756,166	+				-0.6
2,756,166	+				-0.6
2,756,166	+				+3.2
2,756,166	+				-0.5
2,756,167	-				+0.2
2,756,167	-				-0.9