Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14180

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
2,720,317	+		LU632_RS14175	0.77	-0.2
2,720,381	-		LU632_RS14175	0.79	+0.6
2,720,437	-		LU632_RS14175	0.81	+0.6
2,720,517	-		LU632_RS14175	0.84	-1.3
2,720,552	+		LU632_RS14175	0.85	+1.4
2,720,574	+		LU632_RS14175	0.86	+1.7
2,720,576	+		LU632_RS14175	0.86	-1.4
2,720,781	-				+0.6
2,720,800	-				+3.7
2,720,832	-				+0.6
2,720,914	+				+0.6
2,720,951	+				+0.8
2,720,951	+				-0.2
2,720,951	+				-0.2
2,720,970	+				-0.6
2,720,971	-				-0.7
2,720,971	-				-0.0
2,720,971	-				-0.4
2,720,991	+				+1.1
2,720,992	-				-1.4
2,720,992	-				+0.7
2,720,993	+				-0.4
2,720,993	+				-0.1
2,721,677	+				+0.0
2,721,856	+				-0.0
2,721,856	+				-1.5
2,721,856	+				-1.3
2,721,856	+				-0.4
2,721,856	+				-0.6
2,721,857	-				+0.8
2,721,857	-				-0.9
2,721,857	-				+1.6
2,721,857	-				+1.2
2,721,883	+				+0.2
2,722,133	+		LU632_RS14185	0.39	-0.4
2,722,257	+		LU632_RS14185	0.59	-3.1
2,722,258	-		LU632_RS14185	0.60	-0.7
2,722,339	+		LU632_RS14185	0.73	-3.6
2,722,339	+		LU632_RS14185	0.73	+1.1
2,722,339	+		LU632_RS14185	0.73	-0.5
2,722,340	-		LU632_RS14185	0.73	+2.4
2,722,340	-		LU632_RS14185	0.73	-2.4
2,722,340	-		LU632_RS14185	0.73	-1.4
2,722,340	-		LU632_RS14185	0.73	+1.2
2,722,405	+		LU632_RS14185	0.84	-0.4
2,722,406	-		LU632_RS14185	0.84	+0.6
2,722,474	+				-0.2
2,722,524	+				-0.4
2,722,524	+				-0.9
2,722,524	+				-1.1
2,722,525	-				+0.4