Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14150

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
2,711,827	+		LU632_RS14140	0.46	-0.7
2,711,827	+		LU632_RS14140	0.46	-2.3
2,711,867	+		LU632_RS14140	0.53	+2.8
2,711,867	+		LU632_RS14140	0.53	+1.8
2,711,868	-		LU632_RS14140	0.53	-0.6
2,711,868	-		LU632_RS14140	0.53	-0.2
2,711,942	-		LU632_RS14140	0.64	+2.8
2,711,987	+		LU632_RS14140	0.71	+0.9
2,712,044	-		LU632_RS14140	0.79	-1.6
2,712,115	+				-2.4
2,712,116	-				-1.4
2,712,116	-				+1.8
2,712,156	-				+0.8
2,712,158	+				+1.8
2,712,158	+				-0.2
2,712,549	+		LU632_RS14145	0.75	+0.2
2,712,631	+				-1.1
2,712,636	+				-0.1
2,712,636	+				-0.5
2,712,636	+				+0.0
2,712,717	-				+0.6
2,712,721	-				-0.1
2,712,887	+		LU632_RS14150	0.69	-1.4
2,712,958	-				-0.6
2,713,033	-				-1.7
2,713,125	+				+1.8
2,713,126	-				+1.0
2,713,172	+				-1.2
2,713,262	-				+0.6
2,713,265	-				-2.3
2,713,265	-				+0.4
2,713,273	+				+1.2
2,713,289	-				+0.2
2,713,351	+				-0.0
2,713,386	+				+0.9
2,713,390	+				-0.1
2,713,391	-				+1.5
2,713,501	+		LU632_RS14155	0.20	+2.5
2,713,501	+		LU632_RS14155	0.20	-3.1
2,713,555	+		LU632_RS14155	0.29	+2.7
2,713,645	-		LU632_RS14155	0.44	-0.7
2,713,645	-		LU632_RS14155	0.44	-1.8
2,713,653	-		LU632_RS14155	0.46	+0.7
2,713,676	-		LU632_RS14155	0.50	-0.4
2,713,688	+		LU632_RS14155	0.52	-1.9
2,713,688	+		LU632_RS14155	0.52	-2.1
2,713,688	+		LU632_RS14155	0.52	+0.3
2,713,689	-		LU632_RS14155	0.52	+0.7
2,713,765	+		LU632_RS14155	0.65	+0.3
2,713,765	+		LU632_RS14155	0.65	-2.2
2,713,766	-		LU632_RS14155	0.65	-0.4
2,713,807	+		LU632_RS14155	0.72	-1.8
2,713,861	+		LU632_RS14155	0.81	+0.2
2,713,862	-		LU632_RS14155	0.81	-1.6
2,713,862	-		LU632_RS14155	0.81	-1.7
2,713,863	+		LU632_RS14155	0.81	-0.8
2,713,864	-		LU632_RS14155	0.81	-1.5