Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13565

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
2,590,533	-	cheA	LU632_RS13560	0.62	+2.6
2,590,797	-	cheA	LU632_RS13560	0.76	-0.4
2,590,934	+	cheA	LU632_RS13560	0.82	-0.5
2,590,934	+	cheA	LU632_RS13560	0.82	-0.0
2,590,934	+	cheA	LU632_RS13560	0.82	-0.6
2,590,935	-	cheA	LU632_RS13560	0.83	-2.8
2,590,935	-	cheA	LU632_RS13560	0.83	-0.1
2,590,935	-	cheA	LU632_RS13560	0.83	-0.1
2,590,935	-	cheA	LU632_RS13560	0.83	+0.5
2,590,935	-	cheA	LU632_RS13560	0.83	-2.3
2,590,935	-	cheA	LU632_RS13560	0.83	+0.1
2,590,936	+	cheA	LU632_RS13560	0.83	+1.2
2,590,937	-	cheA	LU632_RS13560	0.83	-0.8
2,591,030	+	cheA	LU632_RS13560	0.87	+1.5
2,591,093	+				-0.4
2,591,094	-				-0.8
2,591,362	+				+0.4
2,591,370	+				+0.6
2,591,370	+				-1.8
2,591,370	+				+0.5
2,591,370	+				-2.2
2,591,371	-				+0.5
2,591,371	-				-0.2
2,591,371	-				+0.0
2,591,413	-	motB	LU632_RS13565	0.12	+1.8
2,591,706	+	motB	LU632_RS13565	0.40	-1.1
2,591,770	-	motB	LU632_RS13565	0.46	+0.2
2,591,777	-	motB	LU632_RS13565	0.46	+1.1
2,591,778	+	motB	LU632_RS13565	0.47	-1.2
2,591,778	+	motB	LU632_RS13565	0.47	-1.4
2,591,779	-	motB	LU632_RS13565	0.47	-0.9
2,591,779	-	motB	LU632_RS13565	0.47	-0.7
2,591,821	-	motB	LU632_RS13565	0.51	-1.1
2,591,821	-	motB	LU632_RS13565	0.51	-1.1
2,591,822	+	motB	LU632_RS13565	0.51	-1.2
2,591,822	+	motB	LU632_RS13565	0.51	-0.7
2,591,822	+	motB	LU632_RS13565	0.51	-0.3
2,591,822	+	motB	LU632_RS13565	0.51	-2.9
2,591,822	+	motB	LU632_RS13565	0.51	-0.5
2,591,823	-	motB	LU632_RS13565	0.51	-2.7
2,591,914	-	motB	LU632_RS13565	0.60	-1.0
2,591,956	+	motB	LU632_RS13565	0.64	+1.4
2,591,956	+	motB	LU632_RS13565	0.64	+0.0
2,591,957	-	motB	LU632_RS13565	0.64	-3.1
2,592,007	-	motB	LU632_RS13565	0.69	+0.0
2,592,007	-	motB	LU632_RS13565	0.69	-1.4
2,592,053	-	motB	LU632_RS13565	0.73	-0.3
2,592,094	+	motB	LU632_RS13565	0.77	-1.9
2,592,095	-	motB	LU632_RS13565	0.77	-0.5
2,592,234	+				+3.8
2,592,312	+				+1.0
2,592,324	+				+1.0
2,592,324	+				-0.7
2,592,325	-				-2.1
2,592,421	+	motA	LU632_RS13570	0.10	+3.2
2,592,495	-	motA	LU632_RS13570	0.19	+0.1
2,592,495	-	motA	LU632_RS13570	0.19	-0.9
2,592,561	-	motA	LU632_RS13570	0.26	-0.5
2,592,561	-	motA	LU632_RS13570	0.26	-2.8
2,592,568	+	motA	LU632_RS13570	0.27	+0.1
2,592,597	+	motA	LU632_RS13570	0.30	-1.8
2,592,597	+	motA	LU632_RS13570	0.30	-2.1
2,592,659	+	motA	LU632_RS13570	0.37	-0.5
2,592,660	-	motA	LU632_RS13570	0.37	-1.9
2,592,807	-	motA	LU632_RS13570	0.54	-0.0
2,592,828	+	motA	LU632_RS13570	0.56	-1.3
2,592,828	+	motA	LU632_RS13570	0.56	-2.1
2,592,828	+	motA	LU632_RS13570	0.56	-0.5
2,592,829	-	motA	LU632_RS13570	0.56	-0.1
2,592,829	-	motA	LU632_RS13570	0.56	+0.1
2,592,829	-	motA	LU632_RS13570	0.56	-0.3
2,592,833	-	motA	LU632_RS13570	0.57	+2.2
2,592,881	-	motA	LU632_RS13570	0.62	-0.1
2,592,993	-	motA	LU632_RS13570	0.75	-0.5
2,592,994	+	motA	LU632_RS13570	0.75	-1.4
2,593,009	+	motA	LU632_RS13570	0.76	+1.3
2,593,009	+	motA	LU632_RS13570	0.76	-0.8
2,593,009	+	motA	LU632_RS13570	0.76	+0.5
2,593,173	+				-1.5
2,593,174	-				-2.4
2,593,196	+				+1.1
2,593,196	+				-1.3
2,593,196	+				+0.5
2,593,197	-				+0.3
2,593,199	-				-1.3
2,593,199	-				-1.9
2,593,209	-				-0.7
2,593,228	+				+0.0
2,593,229	-				+0.8
2,593,229	-				+0.7
2,593,251	-				-0.1