Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13370

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
2,548,722	-				-0.9
2,549,021	-		LU632_RS13365	0.32	-0.9
2,549,074	+		LU632_RS13365	0.38	+1.1
2,549,226	+		LU632_RS13365	0.56	+0.0
2,549,226	+		LU632_RS13365	0.56	-0.1
2,549,254	-		LU632_RS13365	0.59	-0.5
2,549,430	+		LU632_RS13365	0.79	-2.0
2,549,440	+		LU632_RS13365	0.80	+0.1
2,549,440	+		LU632_RS13365	0.80	+0.5
2,549,440	+		LU632_RS13365	0.80	-0.5
2,549,440	+		LU632_RS13365	0.80	-0.3
2,549,440	+		LU632_RS13365	0.80	-0.1
2,549,440	+		LU632_RS13365	0.80	-0.6
2,549,440	+		LU632_RS13365	0.80	+0.8
2,549,441	-		LU632_RS13365	0.80	+3.5
2,549,441	-		LU632_RS13365	0.80	-0.8
2,549,441	-		LU632_RS13365	0.80	-0.9
2,549,441	-		LU632_RS13365	0.80	+1.5
2,549,441	-		LU632_RS13365	0.80	+1.0
2,549,441	-		LU632_RS13365	0.80	+0.1
2,549,441	-		LU632_RS13365	0.80	-1.1
2,549,441	-		LU632_RS13365	0.80	-0.5
2,549,441	-		LU632_RS13365	0.80	-0.9
2,549,441	-		LU632_RS13365	0.80	-2.6
2,549,441	-		LU632_RS13365	0.80	-0.8
2,549,441	-		LU632_RS13365	0.80	+0.3
2,549,442	+		LU632_RS13365	0.80	-0.5
2,549,444	+		LU632_RS13365	0.80	+0.4
2,549,444	+		LU632_RS13365	0.80	-0.6
2,549,444	+		LU632_RS13365	0.80	-0.1
2,549,444	+		LU632_RS13365	0.80	-1.3
2,549,444	+		LU632_RS13365	0.80	+1.5
2,549,444	+		LU632_RS13365	0.80	-1.1
2,549,444	+		LU632_RS13365	0.80	-1.6
2,549,445	-		LU632_RS13365	0.80	+0.5
2,549,445	-		LU632_RS13365	0.80	+0.1
2,549,445	-		LU632_RS13365	0.80	-1.1
2,549,448	+		LU632_RS13365	0.81	+3.6
2,549,448	+		LU632_RS13365	0.81	+0.5
2,549,449	-		LU632_RS13365	0.81	-1.1
2,549,449	-		LU632_RS13365	0.81	+2.4
2,549,717	+				-2.0
2,549,717	+				+0.0
2,549,717	+				-0.9
2,549,718	-				-0.7
2,549,718	-				+0.2
2,549,718	-				+2.1
2,549,718	-				-2.1
2,549,718	-				+1.5
2,549,718	-				-1.6
2,549,718	-				-0.1
2,549,760	+				-1.5
2,549,831	-				-1.6
2,549,876	+	pyk	LU632_RS13370	0.11	-0.4
2,549,876	+	pyk	LU632_RS13370	0.11	-0.7
2,549,877	-	pyk	LU632_RS13370	0.11	-2.7
2,549,877	-	pyk	LU632_RS13370	0.11	-2.4
2,549,877	-	pyk	LU632_RS13370	0.11	-0.2
2,549,881	-	pyk	LU632_RS13370	0.11	+0.5
2,549,976	+	pyk	LU632_RS13370	0.18	-0.3
2,549,976	+	pyk	LU632_RS13370	0.18	-0.3
2,549,977	-	pyk	LU632_RS13370	0.18	+0.3
2,550,059	+	pyk	LU632_RS13370	0.23	+1.5
2,550,059	+	pyk	LU632_RS13370	0.23	+0.1
2,550,061	+	pyk	LU632_RS13370	0.24	+0.8
2,550,061	+	pyk	LU632_RS13370	0.24	-1.4
2,550,085	-	pyk	LU632_RS13370	0.25	+0.1
2,550,127	-	pyk	LU632_RS13370	0.28	-1.5
2,550,190	+	pyk	LU632_RS13370	0.33	-0.1
2,550,202	+	pyk	LU632_RS13370	0.33	+0.0
2,550,203	-	pyk	LU632_RS13370	0.33	+0.1
2,550,203	-	pyk	LU632_RS13370	0.33	-2.1
2,550,254	-	pyk	LU632_RS13370	0.37	-1.7
2,550,283	+	pyk	LU632_RS13370	0.39	-1.8
2,550,390	+	pyk	LU632_RS13370	0.46	+1.1
2,550,436	+	pyk	LU632_RS13370	0.50	-1.9
2,550,437	-	pyk	LU632_RS13370	0.50	-1.8
2,550,547	-	pyk	LU632_RS13370	0.57	-1.7
2,550,786	+	pyk	LU632_RS13370	0.74	-0.2
2,550,830	+	pyk	LU632_RS13370	0.77	+0.6
2,550,865	+	pyk	LU632_RS13370	0.79	-0.2
2,550,865	+	pyk	LU632_RS13370	0.79	+0.9
2,550,866	-	pyk	LU632_RS13370	0.79	+1.0
2,550,866	-	pyk	LU632_RS13370	0.79	-2.1
2,550,913	+	pyk	LU632_RS13370	0.83	-1.3
2,550,914	-	pyk	LU632_RS13370	0.83	-3.2
2,550,914	-	pyk	LU632_RS13370	0.83	-0.1
2,551,046	-				+1.5
2,551,160	+				-0.6
2,551,160	+				+0.7
2,551,160	+				-0.5
2,551,167	+				-0.3
2,551,168	-				+0.6
2,551,187	-				+1.5
2,551,355	+		LU632_RS13375	0.26	+0.2
2,551,355	+		LU632_RS13375	0.26	-0.2
2,551,663	+				+1.0
2,551,663	+				-0.8
2,551,663	+				+0.4
2,551,663	+				-1.5
2,551,664	-				+1.9
2,551,664	-				+0.1
2,551,664	-				-0.6
2,551,705	+				+1.5
2,551,809	+				+1.2
2,551,809	+				-1.8
2,551,810	-				-0.5
2,551,810	-				-0.8
2,552,062	+		LU632_RS13380	0.27	-0.2