Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13195

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
2,518,291	-		LU632_RS13190	0.52	+0.3
2,518,325	-		LU632_RS13190	0.55	-0.9
2,518,342	-		LU632_RS13190	0.56	+1.6
2,518,376	+		LU632_RS13190	0.58	-2.6
2,518,424	+		LU632_RS13190	0.61	-0.4
2,518,424	+		LU632_RS13190	0.61	+1.1
2,518,425	-		LU632_RS13190	0.61	+1.4
2,518,428	+		LU632_RS13190	0.61	-0.0
2,518,429	-		LU632_RS13190	0.61	+1.6
2,518,429	-		LU632_RS13190	0.61	-0.6
2,518,579	-		LU632_RS13190	0.71	-0.3
2,518,598	+		LU632_RS13190	0.72	+0.2
2,518,740	+		LU632_RS13190	0.81	-2.0
2,518,740	+		LU632_RS13190	0.81	+1.9
2,518,825	-		LU632_RS13190	0.87	-0.3
2,518,825	-		LU632_RS13190	0.87	-1.9
2,518,828	-		LU632_RS13190	0.87	-1.7
2,518,846	-		LU632_RS13190	0.88	-0.1
2,518,846	-		LU632_RS13190	0.88	+1.2
2,518,851	+		LU632_RS13190	0.88	+0.2
2,518,851	+		LU632_RS13190	0.88	-2.4
2,518,852	-		LU632_RS13190	0.88	+0.4
2,518,921	+				-0.8
2,518,964	-				-0.7
2,518,974	+				-0.6
2,518,974	+				+1.8
2,519,036	+				+0.2
2,519,037	-				-1.2
2,519,060	-				-0.4
2,519,060	-				-2.8
2,519,062	+				+2.9
2,519,062	+				-0.3
2,519,111	+				+0.9
2,519,112	-				-0.4
2,519,113	+				-1.2
2,519,114	-				-1.4
2,519,220	-				+1.6
2,519,224	+				+0.9
2,519,224	+				-0.1
2,519,230	+				-0.1
2,519,232	+				+0.3
2,519,344	-				+1.8
2,519,358	+				-0.0
2,519,359	-				-1.0
2,519,359	-				+0.6
2,519,359	-				-0.3
2,519,604	-		LU632_RS13195	0.22	+0.8
2,519,607	-		LU632_RS13195	0.22	-0.5
2,519,607	-		LU632_RS13195	0.22	-0.8
2,519,773	-		LU632_RS13195	0.32	-1.0
2,519,798	+		LU632_RS13195	0.34	-0.4
2,519,846	+		LU632_RS13195	0.37	-0.9
2,519,850	+		LU632_RS13195	0.37	-0.4
2,519,862	-		LU632_RS13195	0.38	+0.4
2,519,964	+		LU632_RS13195	0.45	+0.8
2,519,971	+		LU632_RS13195	0.45	-1.0
2,519,971	+		LU632_RS13195	0.45	-0.0
2,519,972	-		LU632_RS13195	0.45	-1.4
2,520,075	+		LU632_RS13195	0.52	-0.5
2,520,194	-		LU632_RS13195	0.59	-1.2
2,520,194	-		LU632_RS13195	0.59	-0.0
2,520,344	+		LU632_RS13195	0.69	-0.8
2,520,344	+		LU632_RS13195	0.69	-0.7
2,520,347	+		LU632_RS13195	0.69	+0.5
2,520,348	-		LU632_RS13195	0.69	-2.5
2,520,379	-		LU632_RS13195	0.71	-0.4
2,520,379	-		LU632_RS13195	0.71	-0.8
2,520,444	+		LU632_RS13195	0.75	-0.7
2,520,444	+		LU632_RS13195	0.75	+3.5
2,520,638	+		LU632_RS13195	0.88	-1.4
2,520,639	-		LU632_RS13195	0.88	+2.8
2,520,686	+				+1.3
2,520,865	+				+0.3
2,520,885	+				+0.5
2,520,886	-				-2.0
2,520,891	-				-1.3
2,521,023	+				+0.7
2,521,038	+				+0.2
2,521,042	-				-1.6
2,521,154	+				+0.9
2,521,164	-				+2.4
2,521,164	-				-0.8
2,521,244	+				+0.6
2,521,257	-				-1.8
2,521,349	+				-1.7
2,521,349	+				-0.9
2,521,407	+				-0.4
2,521,407	+				+1.8
2,521,409	+				-0.0
2,521,409	+				+1.2
2,521,442	+				-0.9
2,521,603	+				+0.6
2,521,603	+				+4.2
2,521,603	+				+0.8
2,521,603	+				-0.3
2,521,604	-				-0.1
2,521,620	-				-1.2
2,521,622	+				+1.6
2,521,623	-				+0.2
2,521,670	+				-0.0
2,521,671	-				+0.8
2,521,671	-				+0.6
2,521,671	-				-0.6
2,521,738	-				-0.4
2,521,746	+	rlmA	LU632_RS13200	0.11	-0.0
2,521,747	-	rlmA	LU632_RS13200	0.11	+1.9
2,521,829	+	rlmA	LU632_RS13200	0.21	+3.1
2,521,829	+	rlmA	LU632_RS13200	0.21	-0.6
2,521,830	-	rlmA	LU632_RS13200	0.21	-0.3