Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12515

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
2,376,783	+				-1.8
2,378,081	-		LU632_RS12520	0.24	-0.1
2,378,189	-		LU632_RS12520	0.59	-2.3
2,378,225	-		LU632_RS12520	0.71	-0.6
2,378,246	-		LU632_RS12520	0.77	-0.1
2,378,351	-				+0.2
2,378,457	+				-0.4
2,378,508	+				+0.9
2,378,651	+	pgpB	LU632_RS12525	0.25	-0.9
2,378,651	+	pgpB	LU632_RS12525	0.25	+0.1
2,378,651	+	pgpB	LU632_RS12525	0.25	-0.6
2,378,651	+	pgpB	LU632_RS12525	0.25	-2.6
2,378,656	-	pgpB	LU632_RS12525	0.25	+0.1
2,378,670	+	pgpB	LU632_RS12525	0.27	+1.4
2,378,671	-	pgpB	LU632_RS12525	0.27	+1.4
2,378,676	-	pgpB	LU632_RS12525	0.28	-0.7
2,378,676	-	pgpB	LU632_RS12525	0.28	-3.4
2,378,695	-	pgpB	LU632_RS12525	0.30	+0.6
2,378,732	+	pgpB	LU632_RS12525	0.35	+0.2
2,378,756	-	pgpB	LU632_RS12525	0.38	-0.5
2,378,905	-	pgpB	LU632_RS12525	0.58	-0.1
2,378,953	+	pgpB	LU632_RS12525	0.64	+3.9
2,378,953	+	pgpB	LU632_RS12525	0.64	+0.1