Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12485

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
2,371,127	-	guaD	LU632_RS12480	0.32	-0.6
2,371,127	-	guaD	LU632_RS12480	0.32	+0.9
2,371,133	+	guaD	LU632_RS12480	0.33	-0.1
2,371,221	+	guaD	LU632_RS12480	0.40	+1.0
2,371,222	-	guaD	LU632_RS12480	0.40	-0.7
2,371,222	-	guaD	LU632_RS12480	0.40	-2.7
2,371,313	-	guaD	LU632_RS12480	0.47	-0.0
2,371,375	+	guaD	LU632_RS12480	0.52	-0.3
2,371,375	+	guaD	LU632_RS12480	0.52	-1.0
2,371,376	-	guaD	LU632_RS12480	0.52	+0.4
2,371,376	-	guaD	LU632_RS12480	0.52	-1.1
2,371,427	+	guaD	LU632_RS12480	0.57	-2.0
2,371,670	+	guaD	LU632_RS12480	0.76	-0.7
2,371,770	+	guaD	LU632_RS12480	0.85	+0.2
2,371,857	-				-0.3
2,371,883	-				+1.4
2,371,883	-				-2.6
2,372,461	+	tnpA	LU632_RS12485	0.83	+0.2
2,372,465	+	tnpA	LU632_RS12485	0.84	+1.0
2,372,465	+	tnpA	LU632_RS12485	0.84	+0.7
2,372,467	+	tnpA	LU632_RS12485	0.84	+0.0
2,372,520	-				-2.9
2,372,520	-				+0.2