Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12435

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
2,359,460	+				-1.1
2,359,460	+				-2.2
2,359,460	+				-0.1
2,359,639	+		LU632_RS12420	0.73	-0.7
2,359,673	+		LU632_RS12420	0.86	-0.8
2,359,673	+		LU632_RS12420	0.86	+0.3
2,359,673	+		LU632_RS12420	0.86	+0.5
2,359,693	+				-0.6
2,359,693	+				-1.5
2,359,694	-				+0.5
2,359,694	-				+1.4
2,359,782	+		LU632_RS12425	0.40	-1.1
2,359,813	+		LU632_RS12425	0.56	-0.3
2,359,814	-		LU632_RS12425	0.57	-0.5
2,359,814	-		LU632_RS12425	0.57	+0.4
2,359,881	-				+0.4
2,359,896	-				-0.1
2,359,896	-				+1.8
2,359,896	-				+0.5
2,359,968	+				+0.9
2,360,039	-		LU632_RS12430	0.15	-0.6
2,360,246	+		LU632_RS12430	0.61	-1.4
2,360,406	+				-1.7
2,360,453	-				-0.3
2,360,457	-				+1.0
2,360,457	-				+0.1
2,360,549	+		LU632_RS12435	0.11	-1.4
2,360,627	+		LU632_RS12435	0.20	+1.1
2,360,655	+		LU632_RS12435	0.24	+2.3
2,360,872	-		LU632_RS12435	0.49	-0.9
2,360,872	-		LU632_RS12435	0.49	+0.4
2,360,872	-		LU632_RS12435	0.49	+0.2
2,360,872	-		LU632_RS12435	0.49	-1.8
2,360,874	-		LU632_RS12435	0.50	-1.0
2,361,154	-		LU632_RS12435	0.83	-1.6
2,361,154	-		LU632_RS12435	0.83	-0.1
2,361,214	-				+1.2
2,361,239	-				-0.6
2,361,546	+				+2.2
2,361,546	+				+0.7
2,361,794	-		LU632_RS12440	0.37	-3.3
2,361,857	-		LU632_RS12440	0.46	+0.1