Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12115

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
2,298,855	-		LU632_RS12110	0.15	-2.4
2,298,865	+		LU632_RS12110	0.16	+1.6
2,299,049	+		LU632_RS12110	0.44	+1.1
2,299,049	+		LU632_RS12110	0.44	+5.9
2,299,054	+		LU632_RS12110	0.45	-0.9
2,299,113	-		LU632_RS12110	0.54	+1.7
2,299,146	-		LU632_RS12110	0.59	+1.4
2,299,157	-		LU632_RS12110	0.60	+1.0
2,299,225	+		LU632_RS12110	0.71	+0.9
2,299,226	-		LU632_RS12110	0.71	-2.0
2,299,285	+		LU632_RS12110	0.80	-1.6
2,299,373	+				-0.4
2,299,374	-				-1.9
2,299,374	-				+1.2
2,299,375	+				+0.2
2,299,375	+				+0.3
2,299,375	+				+1.1
2,299,375	+				-0.1
2,299,376	-				-0.6
2,299,400	-				+1.8
2,299,400	-				+0.7
2,299,458	-		LU632_RS12115	0.23	-1.9
2,299,484	+		LU632_RS12115	0.35	-1.7
2,299,574	+		LU632_RS12115	0.79	-2.3
2,299,615	+				-0.9
2,299,622	+				-0.7
2,299,658	-				+0.1
2,299,713	-				-0.4