Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11960

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
2,267,212	-		LU632_RS11955	0.78	-0.9
2,267,218	-		LU632_RS11955	0.78	-0.9
2,267,225	+		LU632_RS11955	0.78	-3.7
2,267,233	+		LU632_RS11955	0.79	+0.6
2,267,242	+		LU632_RS11955	0.79	-1.5
2,267,282	+		LU632_RS11955	0.81	-1.7
2,267,380	+		LU632_RS11955	0.85	+0.6
2,267,381	-		LU632_RS11955	0.85	+2.5
2,267,381	-		LU632_RS11955	0.85	-0.2
2,267,502	-		LU632_RS11955	0.90	-1.8
2,267,622	+				+0.1
2,267,622	+				-1.6
2,267,622	+				+0.0
2,267,623	-				+2.3
2,267,623	-				-0.0
2,267,632	+				-1.2
2,267,832	+				-2.8
2,268,018	-				+0.2
2,268,158	+				+0.5
2,268,202	+				+0.4
2,268,202	+				-0.2
2,268,203	-				+0.3
2,268,226	+				-1.3
2,268,226	+				-0.5
2,268,229	+				-0.0
2,268,229	+				-1.4
2,268,235	-				-0.2
2,268,235	-				+0.7
2,268,269	+				+0.2
2,268,319	+				+0.1
2,268,320	-				-0.5
2,268,320	-				-0.9
2,268,487	+		LU632_RS11960	0.20	-1.2
2,268,487	+		LU632_RS11960	0.20	-0.1
2,268,488	-		LU632_RS11960	0.21	-0.4
2,268,488	-		LU632_RS11960	0.21	-1.7
2,268,567	-		LU632_RS11960	0.26	+0.1
2,268,682	+		LU632_RS11960	0.35	+0.7
2,268,682	+		LU632_RS11960	0.35	-0.4
2,268,683	-		LU632_RS11960	0.35	-3.1
2,268,833	+		LU632_RS11960	0.45	-0.5
2,268,837	-		LU632_RS11960	0.46	-0.2
2,268,837	-		LU632_RS11960	0.46	+2.4
2,268,961	+		LU632_RS11960	0.55	-1.2
2,268,982	+		LU632_RS11960	0.56	+0.0
2,269,044	-		LU632_RS11960	0.61	+2.3
2,269,073	-		LU632_RS11960	0.63	+2.1
2,269,488	+				+0.0
2,269,489	-				+1.4
2,269,717	+				+2.6
2,269,717	+				-0.4
2,269,718	-				-0.6
2,269,718	-				+0.6
2,270,162	+		LU632_RS11965	0.37	+0.3
2,270,162	+		LU632_RS11965	0.37	+0.1
2,270,410	-		LU632_RS11965	0.54	+0.0
2,270,473	+		LU632_RS11965	0.58	-0.6