Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11910

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
2,253,635	-		LU632_RS11905	0.55	+0.4
2,253,635	-		LU632_RS11905	0.55	+1.1
2,253,637	+		LU632_RS11905	0.55	-1.9
2,253,638	-		LU632_RS11905	0.55	-1.2
2,253,647	+		LU632_RS11905	0.55	-2.3
2,253,683	+		LU632_RS11905	0.57	+0.1
2,253,715	-		LU632_RS11905	0.59	+0.5
2,253,755	+		LU632_RS11905	0.62	+0.7
2,253,756	-		LU632_RS11905	0.62	-0.2
2,253,910	+		LU632_RS11905	0.71	+0.4
2,254,078	+		LU632_RS11905	0.80	+0.5
2,254,092	+		LU632_RS11905	0.81	-1.4
2,254,119	-		LU632_RS11905	0.83	+0.2
2,254,221	+		LU632_RS11905	0.89	-0.2
2,254,222	-		LU632_RS11905	0.89	-0.0
2,254,725	+		LU632_RS11910	0.18	-1.0
2,254,736	+		LU632_RS11910	0.20	-0.1
2,254,756	+		LU632_RS11910	0.22	-0.2
2,254,799	+		LU632_RS11910	0.28	-0.0
2,254,800	-		LU632_RS11910	0.28	+1.0
2,254,800	-		LU632_RS11910	0.28	+0.0
2,254,803	+		LU632_RS11910	0.28	+0.3
2,254,804	-		LU632_RS11910	0.29	+1.6
2,254,834	+		LU632_RS11910	0.33	+2.6
2,254,835	-		LU632_RS11910	0.33	+1.7
2,254,835	-		LU632_RS11910	0.33	+0.3
2,254,837	-		LU632_RS11910	0.33	-0.7
2,254,957	-		LU632_RS11910	0.49	+0.3
2,254,979	-		LU632_RS11910	0.52	-1.2
2,255,029	-		LU632_RS11910	0.58	+2.3
2,255,160	+		LU632_RS11910	0.75	-1.3
2,255,161	-		LU632_RS11910	0.75	-0.4
2,255,177	+		LU632_RS11910	0.77	+0.4
2,255,178	+		LU632_RS11910	0.78	+1.7
2,255,207	+		LU632_RS11910	0.81	+1.4
2,255,208	-		LU632_RS11910	0.81	+1.6
2,255,208	-		LU632_RS11910	0.81	-1.2
2,255,273	+				-0.0
2,255,274	+				+0.0
2,255,274	-				-0.8
2,255,274	-				+0.3
2,255,304	+				+0.0
2,255,325	-				+1.1
2,255,329	-				+1.2
2,255,333	+				-2.4
2,255,345	+				+0.3
2,255,346	-				+0.5
2,255,349	+				+4.0
2,255,349	+				-0.2
2,255,349	+				+0.6
2,255,349	+				+1.6
2,255,350	-				-1.9
2,255,350	-				+0.8
2,255,350	-				-2.2
2,255,350	-				-1.2
2,255,442	+				-0.2
2,255,443	-				-0.1
2,255,443	-				-1.1
2,255,443	-				-0.9
2,255,443	-				-2.7
2,255,555	+				-0.6
2,255,556	-				+1.5
2,255,573	+				-1.2
2,255,624	-				+0.7
2,255,624	-				+0.7
2,255,660	+				-0.2
2,255,660	+				-1.2
2,255,678	+		LU632_RS11915	0.11	+0.9
2,255,679	-		LU632_RS11915	0.11	-0.5
2,255,679	-		LU632_RS11915	0.11	-1.4
2,255,792	-		LU632_RS11915	0.23	-2.0
2,255,838	+		LU632_RS11915	0.28	-0.2
2,255,874	+		LU632_RS11915	0.32	+0.1
2,255,976	-		LU632_RS11915	0.43	+1.4
2,256,078	-		LU632_RS11915	0.54	+0.5
2,256,086	+		LU632_RS11915	0.55	-0.3
2,256,087	-		LU632_RS11915	0.55	-1.4
2,256,150	+		LU632_RS11915	0.61	+1.0
2,256,150	+		LU632_RS11915	0.61	-0.2
2,256,192	+		LU632_RS11915	0.66	-0.7
2,256,193	-		LU632_RS11915	0.66	+0.7
2,256,247	+		LU632_RS11915	0.72	-0.5
2,256,248	-		LU632_RS11915	0.72	-1.4