Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11355

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
2,168,215	+		LU632_RS11350	0.16	+1.0
2,168,256	-		LU632_RS11350	0.20	+0.7
2,168,256	-		LU632_RS11350	0.20	+1.2
2,168,256	-		LU632_RS11350	0.20	+1.0
2,168,289	+		LU632_RS11350	0.24	+1.9
2,168,292	+		LU632_RS11350	0.24	+2.0
2,168,295	+		LU632_RS11350	0.24	-0.4
2,168,324	+		LU632_RS11350	0.27	-1.9
2,168,400	+		LU632_RS11350	0.34	-0.8
2,168,439	+		LU632_RS11350	0.38	-0.2
2,168,448	+		LU632_RS11350	0.39	+2.0
2,168,535	-		LU632_RS11350	0.48	-0.3
2,168,535	-		LU632_RS11350	0.48	-1.6
2,168,591	+		LU632_RS11350	0.53	-0.7
2,168,597	+		LU632_RS11350	0.54	+5.1
2,168,597	+		LU632_RS11350	0.54	-1.1
2,168,683	-		LU632_RS11350	0.62	+0.1
2,168,708	-		LU632_RS11350	0.65	-1.7
2,168,858	+		LU632_RS11350	0.79	+0.3
2,168,859	-		LU632_RS11350	0.79	+2.3
2,169,102	+				-0.8
2,169,114	+				-1.7
2,169,115	-				-2.3
2,169,209	+				+0.4
2,169,217	+				-2.1
2,169,218	-				-1.9
2,169,247	+		LU632_RS11355	0.24	-1.7
2,169,383	+				+0.7
2,169,400	-				-1.7
2,170,144	-		LU632_RS11370	0.31	+0.4
2,170,177	+		LU632_RS11370	0.44	-0.9
2,170,220	+		LU632_RS11370	0.60	+1.3
2,170,220	+		LU632_RS11370	0.60	+1.5
2,170,220	+		LU632_RS11370	0.60	-0.5
2,170,221	-		LU632_RS11370	0.61	+1.5
2,170,221	-		LU632_RS11370	0.61	-1.6
2,170,221	-		LU632_RS11370	0.61	+0.4
2,170,222	+		LU632_RS11370	0.61	+0.1
2,170,222	+		LU632_RS11370	0.61	-0.3
2,170,222	+		LU632_RS11370	0.61	-1.1
2,170,222	+		LU632_RS11370	0.61	+0.2
2,170,223	-		LU632_RS11370	0.61	+0.7
2,170,236	-		LU632_RS11370	0.66	+1.1
2,170,236	-		LU632_RS11370	0.66	-0.0
2,170,322	-				-3.3
2,170,322	-				+2.4
2,170,326	-				-0.7
2,170,347	-				-1.1
2,170,349	-				-0.1
2,170,349	-				-0.2